Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07510 203 / 6e-67 unknown protein AT2G01580 148 / 2e-45 unknown protein AT5G05950 102 / 2e-27 MEE60 maternal effect embryo arrest 60 (.1) AT3G46890 78 / 5e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G176000 [exp] 238 / 1e-80 AT3G07510 207 / 2e-68 unknown protein Potri.014G176300 [exp] 117 / 2e-33 AT3G07510 144 / 1e-43 unknown protein Potri.010G196100 [exp] 104 / 3e-28 AT5G05950 181 / 2e-58 maternal effect embryo arrest 60 (.1) Potri.009G038500 [exp] 95 / 2e-24 AT5G05950 150 / 2e-46 maternal effect embryo arrest 60 (.1) Potri.014G176400 [exp] 90 / 2e-22 AT3G07510 122 / 1e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038243 [exp] 219 / 7e-73 AT3G07510 243 / 2e-82 unknown protein Lus10025856 [exp] 214 / 2e-71 AT3G07510 244 / 3e-83 unknown protein Lus10009873 [exp] 96 / 1e-24 AT5G05950 201 / 2e-66 maternal effect embryo arrest 60 (.1) Lus10016474 [exp] 93 / 1e-23 AT5G05950 183 / 3e-59 maternal effect embryo arrest 60 (.1) Lus10040757 [exp] 91 / 2e-21 AT5G59070 597 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10000398 [exp] 59 / 2e-11 AT5G05950 130 / 2e-39 maternal effect embryo arrest 60 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G239500.2 pacid=42777108 polypeptide=Potri.002G239500.2.p locus=Potri.002G239500 ID=Potri.002G239500.2.v4.1 annot-version=v4.1 ATGGATGAATGTAGCCCATGTCCAAAAGACTCGTATCACAGCGAAAACACCAGTCCAGGAGTAGCCTCTTCAACAACCAGCGTGCATGTGACGGCCCTTG ATGGCATAGTGAACGTCAACTCTCTTTTTACAGTCGCTGTCTTTGTTGGTCTCTCCCTTACAACCCCAAATCAACGCAGCCTCGAAAACCGCATCTCCTG CGATGCAGGCATTGACATGGCCAAGAATCTACTAGTCTTCGAGGTTGTGTCCTTCAGTTTCTTCCTCTTCTCTTCTCTGGTTGCACAAGGCCTGAAACTG GCTATCAATTTGTTGAACAGTAAAGACGTGGATGACGCTTTTAGAGCACGCATTAATTTGAAGGTTTTGAGGTTCGGGATGATGGGATCGGCTATAGGGT CGGTCATGGGTTGTGTGTTTTTGATGCTGTCAATGGTTAATGTGATTCAGATTCGGCTGGGGCTGTTGTCTTGTGGGAGTAAGAGTACTGTCCATGCTGT GACTGCTCTGGTTCTTTTAGTCTCTTCTGCTCTCTTGGTCTATATTTCTACTGCTTTTTATGCTTTTCTCCACTGA
AA sequence Show only first row Show all	>Potri.002G239500.2 pacid=42777108 polypeptide=Potri.002G239500.2.p locus=Potri.002G239500 ID=Potri.002G239500.2.v4.1 annot-version=v4.1 MDECSPCPKDSYHSENTSPGVASSTTSVHVTALDGIVNVNSLFTVAVFVGLSLTTPNQRSLENRISCDAGIDMAKNLLVFEVVSFSFFLFSSLVAQGLKL AINLLNSKDVDDAFRARINLKVLRFGMMGSAIGSVMGCVFLMLSMVNVIQIRLGLLSCGSKSTVHAVTALVLLVSSALLVYISTAFYAFLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07510			unknown protein		Potri.002G239500 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	2.23	0.9066
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Potri.010G119400 [exp]	3.31	0.8706
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.003G130700 [exp]	4.47	0.8916
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	6.92	0.8645
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	7.34	0.8895
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	11.40	0.8778
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	11.48	0.8854	Pt-IAA11.1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	11.48	0.8840
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.001G219200 [exp]	12.00	0.8569
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	13.03	0.8483

Compare expression of checked genes

Potri.002G239500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.