Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59200 692 / 0 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 532 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 519 / 4e-178 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 503 / 1e-171 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 501 / 4e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 488 / 2e-164 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 465 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 464 / 4e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 461 / 3e-155 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 454 / 7e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 622 / 0 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 524 / 6e-180 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 508 / 5e-174 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 504 / 1e-171 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 502 / 7e-171 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 494 / 4e-168 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 495 / 6e-168 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 485 / 2e-163 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 478 / 3e-161 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 613 / 0 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 600 / 0 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 500 / 6e-170 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 501 / 2e-169 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 499 / 2e-169 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 495 / 7e-168 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 484 / 3e-164 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029793 [exp] 479 / 8e-162 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 478 / 1e-161 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 473 / 2e-158 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.002G239600.1 pacid=42778987 polypeptide=Potri.002G239600.1.p locus=Potri.002G239600 ID=Potri.002G239600.1.v4.1 annot-version=v4.1 ATGAACCATTCCAGTTCCATGTTATCTCCTGTTGCAGGGTGCTCAGCTTTGCCGCCAAACTCAGGTACAAAGCCCAAAAACACTCCAAACAGAAGAAGAC ACTTCATCTCTCTTCTACAAAATTGCAAACACAATAGCGAAATCCCACCAATCCATGCTAAAATCATAAGGAACCACCATCACCAAGACCCCTTTGTTGT GTTCGAGCTGCTTCGTGTTTGCTCCAATCTAAACTCCATTGGTTACGCGTCCAAGATCTTCTCTCACACTCAAAACCCAAACGTCTATCTTTACACTGCT TTAATTGATGGGCTGGTGTTATCTTGCTATTACACTGACGGGATTCATTTATATTATCAAATGATCAATTCATCACTTGTGCCCGATAGCTATGCGGTCA CTTCGGTTTTAAAAGCTTGTGGGTGCCACTTGGCTTTGAAAGAAGGTAGAGAGGTTCATTCCCAGGTCTTGAAACTGGGTTTAAGTTCAAATAGATCGAT AAGAATTAAACTAATTGAACTTTATGGGAAATGCGGAGCTTTTGAAGATGCAAGGCGGGTTTTCGATGAAATGCCTGAAAGAGATGTTGTTGCGTCGACT GTCATGATAAACTATTACTTTGATCATGGGTTGGTTCATGACGCCACTAGTGTGTTTAGTTTGATCAGGATTAAGGATACGGTTTGTTGGACTGCGATGA TTGATGGGCTGGTTAGGAATGGAGAGAGCAATAGAGCTCTAGAGGTGTTTAGAAATATGCAAAGGGAGGATGTCATGCCTAATGAAGTTACTATCGTTTG TGTTTTATCTGCTTGTTCGGAATTGGGTGCTTTGCAGCTTGGAAGATGGGTGCGCTCTTATATGGACAAGCATCGCATTGAGCTCAACCATTTTGTTGGG GGTGCTTTAATCAATATGTATTCCAGGTGCGGTGATATAGATGAGGCGCAAAGGGTTTTTGAACAAATGAAGGAGAAAAATGTCATCACTTATAATTCTA TGATAATGGGGTTTGCGCTGCACGGGAAGAGCGTTGAAGCCGTTGAGTTGTTTAGGGGATTGATAAAGCAAGGTTTTACCCCAAGTAGTGTCACTTTTGT TGGTGTGTTGAATGCTTGTAGTCATGGGGGTTTGGCTGAGTTGGGATTCGAAATCTTCCACTCTATGGCTAAAGATTATGGGATTGAACCACAAATTGAG CATTATGGGTGTATGGTTGATCTTCTTGGTCGCCTAGGTCGGCTTGAAGAGGCATACAGTTTTATTAGAATGATGAAAGTAGCACCTGATCATGTCATGC TAGGAGCTTTATTAAGTGCTTGTAAGATTCACGGAAACCTGGAATTAGCAGAACGGGTTGCAAAAAGTTTGGTGGCTTGCAAAAATGCAGATTCTGGAAC TTATATTTTGCTATCAAATGCGTACTCTTCATCAGGGAAATGGAAAGAGGCTGCTGAAGTAAGAACAAATATGAGGGAGGAGGGAATAGAAAAGGAACCA GGGTGTAGTTCCATTGAAGTGAACAATGAAATTCACGAGTTCCTTCTGGGAGACCTCAGACACCCCCAAAAGGAAAAGATCTACAAAAAGTTGGAGGAGT TGAACCAAATATTAAGATTAGAAGGATATACTCCAGCAACAGAGGTCGTGCTGCATGATATTGAGAAATCAGAAAAAGAATGGGCTTTAGCAATACATAG TGAGAGGCTTGCTATCTGTTATGGACTAATCTCAACCAAACCATTGACTACATTAAGAGTTGTGAAAAATTTGAGGGTATGCAATGACTGTCACTTAACG ATCAAGCTCATTTCAAATATTACAAGGAGAAAAATAGTGGTGAGGGATCGCAATAGATTTCACCATTTTGAAAATGGAGTTTGTTCTTGTGGGGACTATT GGTGA
AA sequence Show only first row Show all	>Potri.002G239600.1 pacid=42778987 polypeptide=Potri.002G239600.1.p locus=Potri.002G239600 ID=Potri.002G239600.1.v4.1 annot-version=v4.1 MNHSSSMLSPVAGCSALPPNSGTKPKNTPNRRRHFISLLQNCKHNSEIPPIHAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTA LIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAST VMINYYFDHGLVHDATSVFSLIRIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVG GALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIE HYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEP GCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTLRVVKNLRVCNDCHLT IKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	0	1
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	4.58	0.9227
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	5.47	0.9273
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.003G158100 [exp]	7.74	0.9133
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	10.00	0.9224
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	10.58	0.9110
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	11.18	0.9223
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	11.66	0.9186
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	11.74	0.9217
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	12.00	0.9081
AT3G61360			Tetratricopeptide repeat (TPR)...		Potri.001G130400 [exp]	12.24	0.8372

Compare expression of checked genes

Potri.002G239600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.