Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSAL.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12800 289 / 6e-100 PSAL photosystem I subunit l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175600 [exp] 337 / 7e-119 AT4G12800 300 / 3e-104 photosystem I subunit l (.1) Potri.015G041900 [exp] 69 / 2e-13 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002143 [exp] 317 / 8e-111 AT4G12800 300 / 4e-104 photosystem I subunit l (.1) Lus10008747 [exp] 308 / 2e-103 AT4G12830 326 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02605 [poplar] [flax] PsaL Photosystem I reaction centre subunit XI
Representative CDS sequence Show only first row Show all	>Potri.002G239700.1 pacid=42779588 polypeptide=Potri.002G239700.1.p locus=Potri.002G239700 ID=Potri.002G239700.1.v4.1 annot-version=v4.1 ATGGCTACTGCTGCTTCTCCAATGGCCAGCCAGCTCAAGAGCAGCTTTGCCTCATCTTTAGCAAGGAGGCTTGTCATTCCCACAGCCATATCTGGAGCTC CATTTAGAGTTTCACCCAGCAAGAGAAGCTTCACTGTCAAAGCCATTCAATCAGAAAAGCCAACATACCAAGTGGTACAACCAATCAATGGCGATCCCTT CATTGGAAGCCTTGAGACTCCCATCACATCAAGCCCACTGATTGCATGGTACTTGTCAAATCTGCCCGCCTACAGGACAGCAGTCAGCCCACTTCTCCGA GGAATCGAGGTTGGACTGGCCCATGGCTTCCTCCTGGTAGGACCATTTGTCAAGGCTGGTCCACTGAGGAACACAGAGTATGCAGGTGCAGCTGGATCTT TGGCTGCAGGTGGTCTAGTTGCGATACTAAGCATTTGCTTGACCATGTATGGAGTCGCATCATTCACTGAAGGAGAGCCATCCACTGCCCCGGGTCTAAC CTTGACCGGAAGGAAGAAGGAGCCTGACCAGTTGCAAACTTCGGATGGATGGGCCAAGTTCAGTGGAGGATTCTTCTTTGGTGGAATTTCTGGTGTCATC TGGGCATATTTCCTTCTCTATGTCATTAACCTTCCTTACTATGTTAAGTAG
AA sequence Show only first row Show all	>Potri.002G239700.1 pacid=42779588 polypeptide=Potri.002G239700.1.p locus=Potri.002G239700 ID=Potri.002G239700.1.v4.1 annot-version=v4.1 MATAASPMASQLKSSFASSLARRLVIPTAISGAPFRVSPSKRSFTVKAIQSEKPTYQVVQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLR GIEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAGGLVAILSICLTMYGVASFTEGEPSTAPGLTLTGRKKEPDQLQTSDGWAKFSGGFFFGGISGVI WAYFLLYVINLPYYVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	0	1	Pt-PSAL.3
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.010G254700 [exp]	1.41	0.9810	SHMT7,SHM1.3
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.003G077300 [exp]	3.74	0.9696	N21L4
AT2G05310			unknown protein		Potri.014G167300 [exp]	4.12	0.9641
AT1G04420			NAD(P)-linked oxidoreductase s...		Potri.008G167400 [exp]	4.47	0.9716
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	6.32	0.9720
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	8.30	0.9720
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	10.67	0.9627
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.004G095800 [exp]	11.09	0.9547
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Potri.017G118900 [exp]	11.22	0.9683
AT2G42220			Rhodanese/Cell cycle control p...		Potri.006G059200 [exp]	11.48	0.9671

Compare expression of checked genes

Potri.002G239700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.