Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25480 250 / 5e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G01050 114 / 4e-28 TROL thylakoid rhodanese-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169100 [exp] 105 / 4e-25 AT4G01050 400 / 1e-136 thylakoid rhodanese-like (.1) Potri.014G096500 [exp] 104 / 7e-25 AT4G01050 388 / 5e-132 thylakoid rhodanese-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005853 [exp] 266 / 6e-88 AT3G25480 219 / 1e-70 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10001215 [exp] 254 / 3e-83 AT3G25480 208 / 2e-66 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10005947 [exp] 98 / 3e-22 AT4G01050 415 / 1e-141 thylakoid rhodanese-like (.1) Lus10029448 [exp] 97 / 4e-22 AT4G01050 404 / 2e-138 thylakoid rhodanese-like (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G239800.2 pacid=42779752 polypeptide=Potri.002G239800.2.p locus=Potri.002G239800 ID=Potri.002G239800.2.v4.1 annot-version=v4.1 ATGGCGATCATGGAGTCTCTTTCCATTTTACTATCTTCTTCTCCACCCATCCAAAACAACCCTAAAACCCTAAAACCTGCTACCAACTCCAAAGCCAATT CTCATCTAAGCAAATTTACTTTTTCCAAAGAGTCTTCTCTCCAAAATCCTCTCTCACTTGTGTCAAATAAGACCACTTTCTCTTTCACTACCATTCAGCT CTTCACTTCTCTTCCTTGCCTAGCTTCTGAAACTCTAACCTCCCAAACTGAGCAAGTCTCAGACAAAATAAACTTGGAATCAATCTTGGTCTCCATTGAT GACTTCTTCAACAAAAACCCATTTTTTGTTGCTGGCTGTACATTCATTTGGCTTGTTGTTATACCTCTTACTGAAGAGTACTTGAGAAAGTACAAGTTTG TCTCTGCCATTGATGCATTTAGGAAACTACGGGATAACCCGGATGCCCAGCTTTTGGATATTCGGGACAGGAGGAGCGTGGTCGCGCTGGGGTCTCCCAA TTTGAAGATGTTCGATAAGAGTGTGGTTCAGGTTGAGTTCCCTGAGGGAGATGAAGGCGGGTTTGTGAAGAATGTCTTGAAGAATTTTCAAGACCCAGCA AATACCAGCTTGTGTATTTTGGACAATTTTGATGGTGATTCAATGAGAGTGGCTGAGTTGCTGTTCAAGAACGGATTCAAAGAGGCTTATGCAATCAGGG GCGGTGTCAGGGGCAAAAAGGGCTGGTTGGAAATACAGGAAACCCTTTTGCCACCTTCTGTACATATGAAGCCTAAGAAGAAGAAAAAGAAGGCTAAAGT TTCACAACTTGGAGTTAATGGAGGAGTTGCTCAGCAAAATGATGGTGAGGATGGCATACCCTCTTCTACTAGTTTCCCTCTGGAAGGAAGCCAAAGTGTG GACAACGGGCATATAAACAAGCCCATGACATCCACACCTCATGTGGAAATCGATTTCAGATCTCCTTACCCTAAGTACCCAGATTTGAAACCTCCATCTT CCCCAACGCCGTCAAAGCCATGA
AA sequence Show only first row Show all	>Potri.002G239800.2 pacid=42779752 polypeptide=Potri.002G239800.2.p locus=Potri.002G239800 ID=Potri.002G239800.2.v4.1 annot-version=v4.1 MAIMESLSILLSSSPPIQNNPKTLKPATNSKANSHLSKFTFSKESSLQNPLSLVSNKTTFSFTTIQLFTSLPCLASETLTSQTEQVSDKINLESILVSID DFFNKNPFFVAGCTFIWLVVIPLTEEYLRKYKFVSAIDAFRKLRDNPDAQLLDIRDRRSVVALGSPNLKMFDKSVVQVEFPEGDEGGFVKNVLKNFQDPA NTSLCILDNFDGDSMRVAELLFKNGFKEAYAIRGGVRGKKGWLEIQETLLPPSVHMKPKKKKKKAKVSQLGVNGGVAQQNDGEDGIPSSTSFPLEGSQSV DNGHINKPMTSTPHVEIDFRSPYPKYPDLKPPSSPTPSKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25480			Rhodanese/Cell cycle control p...		Potri.002G239800 [exp]	0	1
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	1.00	0.9724
AT1G55140			Ribonuclease III family protei...		Potri.001G200300 [exp]	1.73	0.9704
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	3.46	0.9599
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	8.83	0.9715
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.012G144300 [exp]	11.40	0.9616	Pt-HCF106.2
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	13.71	0.9621
AT4G13200			unknown protein		Potri.002G241000 [exp]	15.87	0.9499
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.002G146200 [exp]	19.28	0.9364	PAG1.4
AT4G24700			unknown protein		Potri.015G084200 [exp]	19.44	0.9591
AT3G01660			S-adenosyl-L-methionine-depend...		Potri.001G340900 [exp]	19.62	0.9594

Compare expression of checked genes

Potri.002G239800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.