Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 721 / 0 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 499 / 7e-171 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 480 / 2e-163 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 465 / 2e-157 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 305 / 4e-91 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 301 / 2e-89 BRL1 BRI1 like (.1.2) AT3G13380 299 / 7e-89 BRL3 BRI1-like 3 (.1) AT1G72300 285 / 6e-84 Leucine-rich receptor-like protein kinase family protein (.1) AT5G45780 273 / 4e-83 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 281 / 3e-82 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078900 [exp] 804 / 0 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 794 / 0 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G177900 [exp] 793 / 0 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.001G349900 [exp] 520 / 4e-179 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 517 / 1e-177 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G003800 [exp] 511 / 1e-175 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G138600 [exp] 499 / 9e-171 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G004216 [exp] 498 / 1e-169 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.004G081700 [exp] 359 / 3e-116 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 840 / 0 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 832 / 0 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 470 / 3e-159 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 315 / 1e-94 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 306 / 3e-91 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 304 / 1e-90 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 296 / 1e-87 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009213 [exp] 287 / 5e-85 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10005403 [exp] 284 / 6e-84 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10013288 [exp] 261 / 8e-83 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G240000.2 pacid=42777181 polypeptide=Potri.002G240000.2.p locus=Potri.002G240000 ID=Potri.002G240000.2.v4.1 annot-version=v4.1 ATGTTGATCAGTCGAGTTTTTAAGGTAGTTGTTGTTAGTTGCCTTTGGTTATTGCTTAGCTGTAGTCTGAGCTATGGCACCGACACTGATATTGCTTGCT TGAAGAGCATAAAAGATTCTCTTATAGACACTCGTAGTTACTTGAACTCTTCATGGAACTTTGAGAACGCTACCGAAGGATTCATCTGTACCTTTCTGGG GGTGGAATGTTGGCATCCTAATGAGAATAGGGTCTTGAACATCCGACTTCCGGATATGGGTCTCAAGGGCAGGTTCCCTCTTGGTCTTACAAATTGCACC TCCATGACGGGCATAGATCTCTCTAGCAACGAGCTCTTTGGATCAATTCCACAAAATATCTCTAAAATAGTTGGTTTTGCCACGTCTCTCGACCTCTCTT CCAACAATTTCTCGGGGGAAATTCCATCAGGTCTTGCAAACTGTTCCTTTCTGAATATCCTTAAGCTCGACCACAACAAGTTGACAGGCCAGATTCCTGG ACAAATTGGGTTTCTAGAGCGCTTGAAAACTTTTAGTGTAGCTAATAATCTTTTGTCCGGGCCAATCCCAAGTTTTTTCAATTCCGATATCTTGACCGAA GAAAATTTTGCAAACAATCCAGAACTCTGTGGGAAGCCTTTTAGCTCTTGCCCGTCCATTTCAAAGAAAACCAACACTGGAATTATTGCTGGGGCAGCAG TTGGCGGGGTTACCATTGCAGCAATAGGTGTGGCAATCGGTATGTTCTTTTATTACCGTAGAATGTCTATGATGAGGAAGCTGAAGAAGGATGATGATCC CGAGGGGAATAAATGGGCTAAGGGCTTAAAGGGAGTAAAAGGCATCAAGGTTTCCCTGTTTGAGAAATCAGTTTCTAAAATGAAATTGAGTGATCTCTTG AAGGCTACCAATAACTTCCACAAAGAGAATATCATCGGGACAGGAAGAACAGGGGCTGTGTACAAAGCAGTGCTAGAGGATGGGACTCCTCTTATGGTTA AGAGATTGCAGGATTCTGAGCACTCGGAAAAAGAATTTGTATCTGAGATGGCTACTCTGGGGAGTGTGAAACATTCTAATTTGGTTCCTCTTTTAGGTTA CTGCGTGGCTAATAAGGAACGGTTTCTGGTTTATAAGCATATGCCAAATGGCACTCTCTATGATCACATACATATTGCAGATGAAAGCAGGAAGCCAATG GAATGGCCTCTGAGACTCAAAATTGGTATAAGGGCAGCAAAAGGATTTGCATGGCTCCATCATTACTGTAACCCTCGCATCATCCACCGAAACATAAGTT CCAAGTGCATCTTGTTGGACGCTGATTTTGAGCCGAAAATTTCTGATTTTGGACTGGCCAGGCTAATGAATCCAATTGATACACATATGAGTACATTTGT GAACGGAGAATTTGGGGATTTGGGTTATGTTGCTCCAGAGTATGCAAGAACTTTGGTGGCCACTCCAAAAGGGGATGTCTACAGCTTTGGAACTGTGCTG CTTGAGCTGGTGACAGGGGAGACACCTACCCATGTGGCTAAAGCTCCTGAAAGCTTCAAGGGGAGTCTGGTTGAATGGATCACACAGCTTTCAAGCAATT CTCAACTTAAAGATGCTGTAGACAAATCTTTGGCGGGGAAGGGTGTTGATAATGAGATTTTCCAGTTCCTTAAAGTTGCATGCAATTGTGTATTGCCAAC GCCCAAAGAGAGGCCCACTATGTTCGAAGTATATCAGCTTCTAAGGGCAATTGGGGAGCAATACCATTTTACCACTGAGGATGAGATTCTGATGCCTTCA GATGCTAGTGGCGCTGATTATATGGAGGAACTTATTGTTTCTCGAGAAGGAAGGGAAAATTATTAG
AA sequence Show only first row Show all	>Potri.002G240000.2 pacid=42777181 polypeptide=Potri.002G240000.2.p locus=Potri.002G240000 ID=Potri.002G240000.2.v4.1 annot-version=v4.1 MLISRVFKVVVVSCLWLLLSCSLSYGTDTDIACLKSIKDSLIDTRSYLNSSWNFENATEGFICTFLGVECWHPNENRVLNIRLPDMGLKGRFPLGLTNCT SMTGIDLSSNELFGSIPQNISKIVGFATSLDLSSNNFSGEIPSGLANCSFLNILKLDHNKLTGQIPGQIGFLERLKTFSVANNLLSGPIPSFFNSDILTE ENFANNPELCGKPFSSCPSISKKTNTGIIAGAAVGGVTIAAIGVAIGMFFYYRRMSMMRKLKKDDDPEGNKWAKGLKGVKGIKVSLFEKSVSKMKLSDLL KATNNFHKENIIGTGRTGAVYKAVLEDGTPLMVKRLQDSEHSEKEFVSEMATLGSVKHSNLVPLLGYCVANKERFLVYKHMPNGTLYDHIHIADESRKPM EWPLRLKIGIRAAKGFAWLHHYCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHMSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVL LELVTGETPTHVAKAPESFKGSLVEWITQLSSNSQLKDAVDKSLAGKGVDNEIFQFLKVACNCVLPTPKERPTMFEVYQLLRAIGEQYHFTTEDEILMPS DASGADYMEELIVSREGRENY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.007G094100 [exp]	1.00	0.9408
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	2.82	0.8981
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	3.16	0.9227
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	3.87	0.9203
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	4.89	0.9156
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	4.89	0.9060
AT3G51580			unknown protein		Potri.019G058400 [exp]	6.32	0.8915
AT1G61140		EDA16	embryo sac development arrest ...		Potri.011G046400 [exp]	7.34	0.8694
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	7.93	0.9001
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	8.77	0.8911

Compare expression of checked genes

Potri.002G240000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.