Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 610 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 464 / 3e-147 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 417 / 1e-129 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 336 / 1e-99 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 324 / 3e-95 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G48360 284 / 8e-82 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 281 / 4e-81 AFH3 formin 3 (.1.2) AT3G07540 266 / 4e-75 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 242 / 2e-67 ATFH8 formin 8 (.1) AT1G59910 237 / 1e-64 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174700 [exp] 942 / 0 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G140200 [exp] 568 / 0 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 540 / 2e-175 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 459 / 2e-145 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 350 / 2e-104 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 340 / 2e-100 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 339 / 2e-100 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.001G416100 [exp] 334 / 1e-98 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 309 / 5e-90 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002149 [exp] 644 / 0 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10008739 [exp] 641 / 0 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 437 / 9e-137 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 436 / 4e-136 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 432 / 2e-134 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 350 / 2e-105 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 342 / 2e-102 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 339 / 2e-101 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 337 / 6e-101 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 315 / 9e-92 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.002G240232.2 pacid=42778073 polypeptide=Potri.002G240232.2.p locus=Potri.002G240232 ID=Potri.002G240232.2.v4.1 annot-version=v4.1 ATGTCAACCTCCACCTCCACCTCCACCTCCATCACAATATTATTATTCTTCCTCTTATCCTACGCACCCGCCCTCCACTTCTCCTCCACCTCTTCTCCTC ATAACCGTAGGATCTTGCACCAACCATTCTTCCCTGAAGGCTCCATTCCTCCCACCGAACCTCCATCTTCCTCCCCACCTTCCCCGCCATCTTCAACAAC TCCCCAAATCCCATTTTCCACTTCTACCCCTAACCCACCCCCCTTTTTCCCTTCCTACCCTTCTCCTCCACCCCCTCCTTCTCCTACCACATTTGCATCT TTCCCTGCCAACATCTCCTCTCTTATCCTCCCCCAGTCTTCCAAGCCCAAACCCACTTCCCAAAAACCCCTCCTCGTCGCCATCTCTGCAGTCATCTCAG CTCTCATTGTCTTGTCCATTACTATTATCGTTTACTACGCTCGTCGCCGGAGAAACCGCAGTAACTTCTCCGATGACAAGACTTACACTGGATCCAATAT CAGCAACAGAAATGCAGATACGAGAGTAATTGGGACTAGTAATAACAGCTATAAACTATCAATTACTTCAACTAGTTCCAACTTTCTCTACATGGACACT TTAGTAAATTCAACGAGGCTAGACGAAAGCTCCGATGGGTCGGACCGTCGGAAACTGGAGTCTCCGGAGCTCCGGCCGCTTCCACCACTCAACAAGGAGA ATTCCACGCTGAAGTATGGAAATGGAGAAGTTGGGTATATTAGTAGTACTACTACTAATAGTAGGGATGGGCGTGAGGAGGAGGAGGAGGAGGAGTTTTA CTCACCGCGAGGATCTTTAGGCGGTAGAGACAGCCCCAGCGGGACAGGATCCGGGTCTAGAAGAGTGTTTGCTGCTGGTGTAGGTTTTGATGAAAAAAGT AGTGATTCTTCGAGCTCGTATTCGTCTTCCACTTCAGCTTCTCCTTCTCGGTCCCAGTCTCTCAGTATATCACCGCCACTAAGTTTGAGTTCCACACCAA AATCACATACTCTACTTGCTGCTCAATCACAGCCGCCGCCACCACCAATGATGGATGTTGATAATGAGAGGAAATCTCCTTCTTCGGCTTCATCTCCAGA TGTTTCGCCTAGAAATGTGCTGTCTTCGGCTTCTACTTCTCCTAGAGTATCGCATCGAAACAATGTGCTTATGCGGTCTCCATCTTTATCTCCAGCTAGA ATATTGAATAACAATTTGTCCCAAAATACACCGTCCAGTTCACCATCTTCAGTTTCTTCTTCACCTGGTAGAGCACTGAACGATTCAGCTCCATTTAACG CGCAGTCTCCGTCCTTGTCCTCTGTTTCTACATCACCTGGCAATGGAGTTTTGGAGAAGACCCCGCCCCTCATAATATCATTTGGTTTGGATCAAACTGC TCAGTCTCCTTCACTGTCTATTGCTTCTACTTCACCAGAAAGAGGTCTCGAGAAGAGCCCACCTCCATCTCCAATAGTTTCAAATGTTTTGGGTCGAATT CAGATGATGTTTCCTTCATTGTCAGCATCCAAGAGCTCATTTTCATCTACCAGAATTTCGTATGTTTCGGATCATGATAAGATGTCTCCTACATTATTAT CTTCAGCTTCTTCTTCGCCAGATAGAAAGAGCCCAGATGCATCACCAAGAATGACTTCTAGTGTTTTAGGTCTAAATGCAAGAATTAGTAATGTTTTGGA GCAGCCTACGTCAGGTCCACCACCACCACCTCCTCCTCCTCCTCTTCCTCCTCTATCAATACTGCAACCACAAAGACAATGGGAAGCTCCCAGTGTTGAT GCATCATCCACACCAACAGACCAACCAATTTCAAAGCCCCCAGCGCTTATACCGCCCTCAAGGCCTTTTGTATTACAAAGCACAACCAATGTGTCGCCAA TTGAGTTGCCACCTAGTTCTAAAACAGTTCAGGATGCCGAGGAAACTCCTAAACCAAAGCTAAAGCCCTTGCACTGGGACAAAGTTAGAGCAAGCTCTGA TCGCGAAATGGTGTGGGATCATCTCAAGTCTAGCTCTTTTAAATTGAACGAAGAAATGATTGAAACACTGTTTGTTGTCAAAACACCAAAACCAAAGGCA ACTACTCCTAATTCAGTTAGTCCAACAACTAGCCGAGAGAACAGGGTACTTGATCCCAAAAAGGCACAGAACATTGCAATTTTGCTCAGGGCACTCAATG TGACAATTGAGGAAGTCTGTGAAGGCCTTTTAGAAGGTAATGTTGATACTCTTGGAACCGAACTTCTAGAAAGTTTATTGAAGATGGCGCCTACCAAAGA AGAGGAGCGCAAACTGAAAGAATACAAAGAGGATTCTCCAACGAAGCTTGGCCATGCTGAGAAATTTCTGAAGGCAGTGCTTGATGTACCCTTTGCATTT AAACGAGTGGATGCAATGCTTTACGTAGCCAATTTTGAGTCCGAGGTTGAGTACCTCAAGAAGTCCTTTGAAACTCTAGAGGCAGCCTGTGAAGAGCTGA GAAATAGCAGGATGTTTTTTAAACTTTTAGAAGCCGTGCTCAAGACAGGGAACCGCATGAATGTTGGCACTAACCGGGGTGATGCCCATGCCTTCAAGCT TGACACGCTCCTTAAGCTTGTTGATGTCAAGGGTGCAGATGGAAAGACCACACTCTTGCATTTTGTTGTGCAGGAAATTATAAGAACGGAAGGTGCTCGT CTTTCTAGTACCAACCAAACTCCAAACTCCATTTCCAGTGAAGATGCCAAGTGGAGGAGGCTTGGCCTGCAAGTTGTTTCTGGTCTTAGTTTAGAGCTCA CCCATGTGAAGAAAGCAGCTGCTATGGATTCTGATGTGCTTAGCAGTGATGTCTCCAAGCTTTCTAGAGGCACTGAGAATATCAGTGAGGTGGTGCGATT AATTGAAAAACTGGGGATGGTGGAAAGCAATCAGAAATTTTCAGAGTCAATGACAATGTTCATGAAAATGGCTGAGGAGGAGATTATAAGGATTCAAGCC CAAGAAAGTGTTGCTTTATCGCTAGTAAAGGAGATCACAGAGTACTTCCATGGTAATTCAGCCAAGGAAGAGGCTCACCCTTTCAGAATCTTCATGGTGG TGAGAGACTTTCTTAGTGTCCTTGATCGTGTCTGCAAAGAAGTTGGCATGATAAATGAGCGAACAATTGTTAGTTCTGCCCTTAAATTTCCAGTTCCAGT AAATCCAATGCTTCCGGTTCCTGTAAATCCAACGCTGCCACAGGTTTTTTCTGGATCCAATGCAAGCAAACAGTATAATTCCTTTGATGACGAGAGTGAA TCACCTTAA
AA sequence Show only first row Show all	>Potri.002G240232.2 pacid=42778073 polypeptide=Potri.002G240232.2.p locus=Potri.002G240232 ID=Potri.002G240232.2.v4.1 annot-version=v4.1 MSTSTSTSTSITILLFFLLSYAPALHFSSTSSPHNRRILHQPFFPEGSIPPTEPPSSSPPSPPSSTTPQIPFSTSTPNPPPFFPSYPSPPPPPSPTTFAS FPANISSLILPQSSKPKPTSQKPLLVAISAVISALIVLSITIIVYYARRRRNRSNFSDDKTYTGSNISNRNADTRVIGTSNNSYKLSITSTSSNFLYMDT LVNSTRLDESSDGSDRRKLESPELRPLPPLNKENSTLKYGNGEVGYISSTTTNSRDGREEEEEEEFYSPRGSLGGRDSPSGTGSGSRRVFAAGVGFDEKS SDSSSSYSSSTSASPSRSQSLSISPPLSLSSTPKSHTLLAAQSQPPPPPMMDVDNERKSPSSASSPDVSPRNVLSSASTSPRVSHRNNVLMRSPSLSPAR ILNNNLSQNTPSSSPSSVSSSPGRALNDSAPFNAQSPSLSSVSTSPGNGVLEKTPPLIISFGLDQTAQSPSLSIASTSPERGLEKSPPPSPIVSNVLGRI QMMFPSLSASKSSFSSTRISYVSDHDKMSPTLLSSASSSPDRKSPDASPRMTSSVLGLNARISNVLEQPTSGPPPPPPPPPLPPLSILQPQRQWEAPSVD ASSTPTDQPISKPPALIPPSRPFVLQSTTNVSPIELPPSSKTVQDAEETPKPKLKPLHWDKVRASSDREMVWDHLKSSSFKLNEEMIETLFVVKTPKPKA TTPNSVSPTTSRENRVLDPKKAQNIAILLRALNVTIEEVCEGLLEGNVDTLGTELLESLLKMAPTKEEERKLKEYKEDSPTKLGHAEKFLKAVLDVPFAF KRVDAMLYVANFESEVEYLKKSFETLEAACEELRNSRMFFKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGAR LSSTNQTPNSISSEDAKWRRLGLQVVSGLSLELTHVKKAAAMDSDVLSSDVSKLSRGTENISEVVRLIEKLGMVESNQKFSESMTMFMKMAEEEIIRIQA QESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSVLDRVCKEVGMINERTIVSSALKFPVPVNPMLPVPVNPTLPQVFSGSNASKQYNSFDDESE SP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.002G240232 [exp]	0	1
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.016G098200 [exp]	7.48	0.7905	Pt-TIP2.8
AT3G26950			unknown protein		Potri.001G325500 [exp]	12.96	0.7530
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	13.96	0.7658
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	16.24	0.7940
AT2G37195			unknown protein		Potri.016G090000 [exp]	19.28	0.8084
AT1G58350		ZW18	Putative serine esterase fami...		Potri.013G104400 [exp]	22.20	0.7700	Pt-ZW18.2
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060126 [exp]	25.98	0.8069
AT3G25590			unknown protein		Potri.008G109600 [exp]	30.88	0.7824
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	33.24	0.7908
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.003G164000 [exp]	46.95	0.7506

Compare expression of checked genes

Potri.002G240232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.