Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1) AT1G76010 161 / 4e-47 Alba DNA/RNA-binding protein (.1) AT1G20220 157 / 5e-46 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G244300 [exp] 172 / 2e-52 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 172 / 1e-51 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 167 / 3e-50 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G017600 [exp] 162 / 6e-48 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022807 [exp] 237 / 7e-76 AT3G07030 241 / 4e-76 Alba DNA/RNA-binding protein (.1) Lus10011874 [exp] 234 / 3e-73 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 167 / 2e-49 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 166 / 2e-49 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 165 / 2e-49 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10021844 [exp] 166 / 4e-49 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G240601.1 pacid=42778429 polypeptide=Potri.002G240601.1.p locus=Potri.002G240601 ID=Potri.002G240601.1.v4.1 annot-version=v4.1 ATGGATAGATACACCCGAGTCGAAAAGCCAAAGCCCGAGTCTCCCATAAACGAGAATGAGATCCGTATCACTTCCGGTGGCCCCCTCCGTAACTATATCA GCTATGGCACTTCTCTTCTCCAGGAGAAACATGTTAAGGAGATTGTCTTGAAAGCCATGGGACAGGCAATCAGCAAGACAGTATCTGTTGCAGAAGGTAT AAAGCGGAGAAATCCTCGTTTGCACCAAGATACTACCATCAGCTCAGTGAGCATAACTGATGTTTGGGAACCATTAGAAGAGGGCCTTGTACCTGTGGAA CAGACGCGCCAGGTCTCAATGATTACGATCACCTTATCTTTTAGGGAGCTAAACAAAATGTCTCCTGGGTACCAAGTTCCACACTCCATGAAACAACCAA AGCAGCAAGATCAGCAGCAGCACCACCAGCAGCAGCAGCAGCAGCAGCAGCAACCTAGACAAGCACGTGGTTCCTACAATGCTGTTCCTGAAGATTCATA TGGCCGAGGTGATTCGTATGGCCGAGGTGATTCATATGGCCGAGGTGATTCGTATGGCCGAGGTGATTCATATGGCCGAGGACGTGGTAGAGGGAGAGGA CGGAACTGGGGCCGGGGTGGATATGGATACGGAAACAATCAGGGTAACTACTACCAAGGAAGCTATCGGGGAAATTATCACGGGAACTATCAGGGAAACT ATCAAGATAATGGTGGTTACTCAAATCAGGGCCGTGGTGGGGGTCGGGGCAGGAATTGGGGTTATCGTGGAACTGGATATGAAAGAGGCAGAGGTGGAGG GGGCAGAGGCTATGGCCAAGGTCGTGGAAGGATGGCCAATCACTCAAGGGGCGGCGGAGGTGGCAATGGCAACAGCAACGGCAACGGCAACCAAGCTTAA
AA sequence Show only first row Show all	>Potri.002G240601.1 pacid=42778429 polypeptide=Potri.002G240601.1.p locus=Potri.002G240601 ID=Potri.002G240601.1.v4.1 annot-version=v4.1 MDRYTRVEKPKPESPINENEIRITSGGPLRNYISYGTSLLQEKHVKEIVLKAMGQAISKTVSVAEGIKRRNPRLHQDTTISSVSITDVWEPLEEGLVPVE QTRQVSMITITLSFRELNKMSPGYQVPHSMKQPKQQDQQQHHQQQQQQQQQPRQARGSYNAVPEDSYGRGDSYGRGDSYGRGDSYGRGDSYGRGRGRGRG RNWGRGGYGYGNNQGNYYQGSYRGNYHGNYQGNYQDNGGYSNQGRGGGRGRNWGYRGTGYERGRGGGGRGYGQGRGRMANHSRGGGGGNGNSNGNGNQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07030			Alba DNA/RNA-binding protein (...		Potri.002G240601 [exp]	0	1
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	2.82	0.7790
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.004G145500 [exp]	4.89	0.7218	OST1.2
AT1G68490			unknown protein		Potri.015G047100 [exp]	8.12	0.7124
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.001G026100 [exp]	9.69	0.7410
AT3G55140			Pectin lyase-like superfamily ...		Potri.016G080600 [exp]	11.31	0.6832
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077300 [exp]	17.20	0.7172
AT1G68490			unknown protein		Potri.012G056500 [exp]	18.97	0.6860
					Potri.017G120050 [exp]	22.24	0.7134
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G033600 [exp]	22.44	0.6537
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	27.92	0.6277

Compare expression of checked genes

Potri.002G240601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.