Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48850 404 / 9e-143 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 357 / 4e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 293 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 236 / 6e-75 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 219 / 4e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 102 / 2e-25 unknown protein AT1G49940 50 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177600 [exp] 426 / 1e-151 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 416 / 2e-147 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 288 / 2e-94 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 284 / 4e-93 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 278 / 1e-88 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 275 / 3e-87 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 50 / 1e-07 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011872 [exp] 477 / 1e-171 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 469 / 5e-161 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10011738 [exp] 399 / 1e-140 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 394 / 1e-138 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 286 / 4e-94 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 286 / 8e-94 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 286 / 9e-94 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 285 / 2e-93 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 266 / 3e-85 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 252 / 5e-80 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.002G240700.1 pacid=42777817 polypeptide=Potri.002G240700.1.p locus=Potri.002G240700 ID=Potri.002G240700.1.v4.1 annot-version=v4.1 ATGGAAGCAGCAGCAGCAGGAAGCTCAAGAAAGTGCAGTGCTAATGGTGGTAAAAAAGAGAAGGATCTGTTCCATGTTATTCACAAGGTTCCTGCTGGTG ATGGCCCTTATGTTAAAGCCAAGCATGCTCAGCTGGTACAAAAAGACCCAGAAGCAGCCATAGTTTGGTTCTGGAAGGCGATAAATGCAGGAGACAAAGT GGATAGTGCTCTGAAGGACATGGCAGTTGTCATGAAGCAAATAGACAGAACTGAAGAAGCCATTGAAGCTGTCAAGTCTTTCAGAGGCCGTTGCTCAAAG CAAGCCCAGGAATCACTTGATAACGTTCTTATTGACTTGTATAAGAAATGTGGGAAAGTAGAGGAGCAGATAGAGTTGATAAAAAGGAAGCTAAGACTAA TATACCAAGGAGAGGTATTCAATGGCAAACCCACAAAAACTGCACGCTCCCATGGAAAGAAGTTCCAAGTTTCTGTCAAGCAAGAGACCTCCAGGTTGCT GGGAAACTTAGGATGGGCCTATATGCAAAAGCCGAACTTCATAGCAGCCGAGGTAGTGTATCAGAAAGCCCAGATGATTGACCCAGATGCTAACAAGGCC TGTAACTTAGCACTCTGCTTGATCAAGCAAGCTCGATACGACGAGGCTCGTTCTGTTCTCCTCGATGTCTCACAGGGAAGACTTCCCGGTTCCGGTGACG TTAAGTCAAGATCACGGGCCGAGGAATTGTTGATGGAAGTGAAATCAAGGGAGACCCCCGATGAGTTAACGGATATGCTGGGCTTTAATCTTGATGAGGA TGATGATTTTGTGAAAGGGCTAGAGAAATTGATGAGTGAATGGGCCCCATCTAGATCCAAAAGGCTTCCAATCTTTGAAGAAATCTCTTCATTTAGGGAC CCGTTGACTTGTTAA
AA sequence Show only first row Show all	>Potri.002G240700.1 pacid=42777817 polypeptide=Potri.002G240700.1.p locus=Potri.002G240700 ID=Potri.002G240700.1.v4.1 annot-version=v4.1 MEAAAAGSSRKCSANGGKKEKDLFHVIHKVPAGDGPYVKAKHAQLVQKDPEAAIVWFWKAINAGDKVDSALKDMAVVMKQIDRTEEAIEAVKSFRGRCSK QAQESLDNVLIDLYKKCGKVEEQIELIKRKLRLIYQGEVFNGKPTKTARSHGKKFQVSVKQETSRLLGNLGWAYMQKPNFIAAEVVYQKAQMIDPDANKA CNLALCLIKQARYDEARSVLLDVSQGRLPGSGDVKSRSRAEELLMEVKSRETPDELTDMLGFNLDEDDDFVKGLEKLMSEWAPSRSKRLPIFEEISSFRD PLTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	0	1
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Potri.014G154200 [exp]	1.00	0.9051
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	7.54	0.8680
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	8.00	0.8546
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	16.97	0.8358
					Potri.004G011450 [exp]	18.43	0.8196
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	18.76	0.8365
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	18.97	0.8088
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	19.36	0.7965
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	23.00	0.8042	Pt-CYTGS.5
					Potri.013G032900 [exp]	23.32	0.8197

Compare expression of checked genes

Potri.002G240700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.