Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07050 667 / 0 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 205 / 2e-58 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT2G27200 134 / 2e-33 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08410 132 / 1e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 89 / 8e-19 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 53 / 3e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10650 48 / 1e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G39960 44 / 0.0004 GTP binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G402500 [exp] 211 / 2e-60 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 117 / 2e-27 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 83 / 7e-17 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 63 / 2e-10 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G048900 [exp] 54 / 2e-07 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028574 [exp] 693 / 0 AT3G07050 743 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018881 [exp] 629 / 0 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 559 / 0 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 171 / 1e-45 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10013359 [exp] 128 / 5e-31 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004103 [exp] 127 / 1e-30 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021017 [exp] 112 / 2e-26 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10006927 [exp] 83 / 6e-17 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 84 / 1e-16 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006578 [exp] 59 / 5e-09 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.002G241100.2 pacid=42779296 polypeptide=Potri.002G241100.2.p locus=Potri.002G241100 ID=Potri.002G241100.2.v4.1 annot-version=v4.1 ATGGTGAAGAAGAGCAAAAAGAGTAAGAGTAAGAGGGTGTCGTTGAAACAGAAGTATAAGGTTATAAGGAAAGTGAAGGAGCATCACAAAAAGAAGGCCA AAGAAGCTAAGAAGTCTGGCTTGGATAAAAAACGCAAGGTTGAGAAGGACCCTGGTATTCCTAATGAATGGCCTTTCAAGGAACAGGAGCTAAAAGCTCT TGAAGCTCGCAGGGCTCGTGCTATTGAGGAGTTGGAGCAAAAAAAAGCTGCCCGCAAAGAGAGGGCTCAAAAGAGGAAGCTGGGGCTGTTAGAGAATGAT GGCACTATGGATTCGGCAAAAGAACAAAATACTGGAGACCAAAATGGTGGTGTAGAATTCAAAGGAATCACGAGAAACCGAGAAAATTCTGATAGGGCAT TCTACAAGGAGCTGGTTAAAGTTGTTGAAGCATCGGATGTCATCCTGGAGGTCCTAGATGCACGGGATCCTCTTGGTACACGATGTGTTGATATGGAAAA GATGGTGATGAAATCGGGTTATGATAAGCACCTAGTGTTGCTTCTAAACAAAATTGATCTTGTCCCTCGTGAAGCTGTTGAGAAATGGCTTAAGTATCTT AGAGAAGAATTCCCGGCAGTTGCATTTAAGTGCAATACGCAAGAGCAGAGATCAAACTTAGGGTGGAAATCTTCCTCAAAATCAGCCAAAACGAGCAATC TTCTACAAACAAGTGATTGTCTTGGAGCTGAAACTCTTATTAAATTGCTGAAAAATTACTCAAGAAGCCATGAGATCAAGAAATCTATCACAGTTGGTGT AATTGGCCTGCCCAATGTTGGCAAGAGTAGTCTAATTAACAGCTTGAAGAGATCCCATGTTGTCAATGTTGGCTCTACTCCAGGATTAACTAGATCAATG CAAGAAGTTCAGCTAGACAAGAATGTTAAATTGTTGGACTGTCCTGGTGTTGTTATGCTTAAATCTGTGGAGAGTGATGCATCTGTAGCTCTTCGAAACT GCAAAAGGATAGAGAAGTTGGACGATCCAGTTGGTCCAGTGAAAGAAATTCTCAAGCTGTGCCCAGATAGACTGTTGGTAACGCTATACAAGATCCCTAG CTTTGATTCAGTTGATGACTTTCTACAAAAGGTGGCCACTGTAAGGGGTAGACTCAAAAAGGGTGGTATTGTGGATGTTGATGCTGCTGCTAGAATTGTT CTGCATGACTGGAATGAAGGTAAGATACCATATTACACAATGCCCCCAGCCAGGAATCAAGGGGAGCCTTCAGAGGCAAAGATTGTTTCAGAGTTAGGGA AGGAATTTAACATTGATGAAGTTTACAATGGTGAATCCTCATTCATTGGAAGCCTCAAGTCTGCTGACGATTACAATCCTGTAGAAGTTCCTCCTAGTTG CCCTCTCAATTTTGATGAAAAGCTGATTGAGGTTTGTGGAGATGGAGATGAAGTTCAACCATCAACTAAAGGTGATGAAAGCTCCAAAGAACTGGTTAAC AATGATGACGAGCCAATGGAGTCTGAAGATGACAATGCTAACAAGACTAAGGCAAAAACTGAAATTAGCAGGCAAAATGAGAAGCTCTATTCAGCAGAAG GTATACTGAATACAAAGATGAAAAGAGCAGAGAAGAAAAGGAGGAAAAAAGCGGCTAAAGTGGATACAATGGATGGTGATTATGACTTTAAAGTGGATTA TAAGAAAGGTTCGGCCATGAATGTTGAAGACAGGAGTGGTAAGATGGATGATGATAGTCCAATTCCTGCTGAGGTGCCTATGTCTGGTATTCAATGTGAT GATGAGTAA
AA sequence Show only first row Show all	>Potri.002G241100.2 pacid=42779296 polypeptide=Potri.002G241100.2.p locus=Potri.002G241100 ID=Potri.002G241100.2.v4.1 annot-version=v4.1 MVKKSKKSKSKRVSLKQKYKVIRKVKEHHKKKAKEAKKSGLDKKRKVEKDPGIPNEWPFKEQELKALEARRARAIEELEQKKAARKERAQKRKLGLLEND GTMDSAKEQNTGDQNGGVEFKGITRNRENSDRAFYKELVKVVEASDVILEVLDARDPLGTRCVDMEKMVMKSGYDKHLVLLLNKIDLVPREAVEKWLKYL REEFPAVAFKCNTQEQRSNLGWKSSSKSAKTSNLLQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRSHVVNVGSTPGLTRSM QEVQLDKNVKLLDCPGVVMLKSVESDASVALRNCKRIEKLDDPVGPVKEILKLCPDRLLVTLYKIPSFDSVDDFLQKVATVRGRLKKGGIVDVDAAARIV LHDWNEGKIPYYTMPPARNQGEPSEAKIVSELGKEFNIDEVYNGESSFIGSLKSADDYNPVEVPPSCPLNFDEKLIEVCGDGDEVQPSTKGDESSKELVN NDDEPMESEDDNANKTKAKTEISRQNEKLYSAEGILNTKMKRAEKKRRKKAAKVDTMDGDYDFKVDYKKGSAMNVEDRSGKMDDDSPIPAEVPMSGIQCD DE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	0	1
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Potri.003G194400 [exp]	1.00	0.8710
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	1.41	0.8696
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	2.23	0.8145
AT1G42440			unknown protein		Potri.005G250100 [exp]	3.00	0.8330
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	10.39	0.8311
AT4G26600			S-adenosyl-L-methionine-depend...		Potri.001G369600 [exp]	12.48	0.8132
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	13.03	0.6888
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	16.94	0.7980
AT1G11240			unknown protein		Potri.004G035200 [exp]	17.23	0.7796
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.003G045700 [exp]	18.00	0.6790	Pt-ATRLI1.2

Compare expression of checked genes

Potri.002G241100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.