Plant FIBer expression Database

Potri.002G241200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48830 489 / 7e-170 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025934
[exp]
547 / 0 AT5G48830 446 / 2e-153 unknown protein
Lus10038165
[exp]
521 / 0 AT5G48830 437 / 1e-148 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12452 DUF3685 Protein of unknown function (DUF3685)
Representative CDS sequence
>Potri.002G241200.6 pacid=42780216 polypeptide=Potri.002G241200.6.p locus=Potri.002G241200 ID=Potri.002G241200.6.v4.1 annot-version=v4.1
ATGGCAGAGTATGTAGTTTCTTCCTCACCTTCATTTAGCAATTTGCATATGTGGAGGAGAAGCCGTGTCAAGGAGACGACGCCCTCTTTTACCCCCAACA
ATTTGCACTCACAAAGAAAGTATTCCCACCGAAACTGTAAAGTTGTCCAGGTCTCTACGCTGAAAACATGCTTTGATGGGTTATTAAGTTTCAAAGCAAG
CCCTGTTACTAGGAAGGATTCCGTCAAGTGCTGTTGCCTGGGATCGTTGGTGGACCCTAATGGTGCAATGGTGTCTGGCTGGGTTTCTGTCAGCGATCAG
TTACTTCTGATGGCTAGTATATTTCTTACATATATGGCTGGAGTAATTCCCCAACACAACTCCAATAACACTCATCAGAAGAATTTTATGGAGGACAATG
TGGTTGTTGAAGGCTCTACGTCTTCTGGTAGTTATAGGAAGAAAGATGACCATGTTAATTTAAAGCATGCTTGGGATGCAGTGAAGGAAAAACTTTTGGA
TTCTCTAGATGCTATAGAACGCAGGAGCAACTTGGGAAACAAATTCCTTCAATTTGAGCAACAACATGCCAAGCGACCTTTAAGTTTGTTTGCTATATCC
GACAGCCCAAAGTTGCGATTACTGTGGACTTCTTTTCAGTGGCTCGAGGAAGAGGTAAAGAACGTATTTGCTGATAGTGAGGCTGTTAGCATGGATGATT
GGTTGGCAATCTTTCCTGAAATTATTCAAAAATCCTGTCACCCCGTATGCATGGCTTGGCTGGTAGAGGAGCTTCAGCTAGAAAACAAGAAGTCTGACAA
GGAGCTTGTTTCTTTGATGATTGAGAAATTGAAAGGAGATGATATTGTTTTACAGAATATAAGAAAGTCGGGCAAAGAGGATCTTTATGCAGAATTATTA
TACTTTCTTAGATTTGGTTCTCTCAGGAAGAGTTGCTGTTATGATTGTAGATTGTTTATTTTGCATGGAGATTCCATATTGGAAGATTTGGTGATAACTT
TAGCGGATGGGATTGCTAGTGTTTATTTGGAGATTATTTCTGTTGATGGTAGTTTGTCGAATGAAATGAACAGCCTGGATATGTTTATGTGTAATATGTC
AACCCGAGCACTCCAGAGATTACGCAATGAGGTAGCTCTGAATCAGTGGCTGTATCAAAATGTGGAGGCAGTTGTATCAATGTATGAGGACCGATTTGAC
CTGTGTACTCTTCAATTAAAATTCATTGAAGAACCCTGTGAGAATCAGATTGAAAAGCATCCTTGGTGGAAGAAGCTTACTCTGAGAAAATCCATAATGA
TGCAATCTTCATGTTTTAGTGCCATAAGCCACTTCTCTATGCCTGTAAAGCGGACAAAGGAACTGAGGGCCTTGACAGGGTGGAGATACTACTTCAGTCT
ATACCTTGAGTTATCTGACATTATGATGCCACTGGTCAGAGCTGTTATTGACAAAGTCAGCAATGCTATTTCATTCTTCCTGGTTACGTTGATTGGGAGG
TCATTAGGACTCATTTACACTGGAATTAGGCAGTCCCTGCGATGGAAGTGA
AA sequence
>Potri.002G241200.6 pacid=42780216 polypeptide=Potri.002G241200.6.p locus=Potri.002G241200 ID=Potri.002G241200.6.v4.1 annot-version=v4.1
MAEYVVSSSPSFSNLHMWRRSRVKETTPSFTPNNLHSQRKYSHRNCKVVQVSTLKTCFDGLLSFKASPVTRKDSVKCCCLGSLVDPNGAMVSGWVSVSDQ
LLLMASIFLTYMAGVIPQHNSNNTHQKNFMEDNVVVEGSTSSGSYRKKDDHVNLKHAWDAVKEKLLDSLDAIERRSNLGNKFLQFEQQHAKRPLSLFAIS
DSPKLRLLWTSFQWLEEEVKNVFADSEAVSMDDWLAIFPEIIQKSCHPVCMAWLVEELQLENKKSDKELVSLMIEKLKGDDIVLQNIRKSGKEDLYAELL
YFLRFGSLRKSCCYDCRLFILHGDSILEDLVITLADGIASVYLEIISVDGSLSNEMNSLDMFMCNMSTRALQRLRNEVALNQWLYQNVEAVVSMYEDRFD
LCTLQLKFIEEPCENQIEKHPWWKKLTLRKSIMMQSSCFSAISHFSMPVKRTKELRALTGWRYYFSLYLELSDIMMPLVRAVIDKVSNAISFFLVTLIGR
SLGLIYTGIRQSLRWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48830 unknown protein Potri.002G241200
[exp]
0 1
AT5G49030 OVA2 ovule abortion 2, tRNA synthet... Potri.010G014500
[exp]
3.74 0.9536
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600
[exp]
7.34 0.9425
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.006G180100
[exp]
7.74 0.9444
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.017G028800
[exp]
8.77 0.9373 NS1.2
AT2G05310 unknown protein Potri.014G167300
[exp]
11.31 0.9423
AT3G56040 UGP3 UDP-glucose pyrophosphorylase ... Potri.010G185800
[exp]
12.40 0.9274
AT1G80030 Molecular chaperone Hsp40/DnaJ... Potri.003G031800
[exp]
16.06 0.9373
AT4G37270 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY MET... Potri.007G049000
[exp]
18.49 0.9148
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.001G277305
[exp]
19.18 0.9266
AT4G33760 tRNA synthetase class II (D, K... Potri.001G289001
[exp]
22.13 0.9081

Potri.002G241200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.