Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07060 584 / 0 EMB1974 embryo defective 1974, NHL domain-containing protein (.1) AT1G56500 87 / 1e-17 haloacid dehalogenase-like hydrolase family protein (.1) AT1G54220 49 / 6e-06 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G13930 43 / 0.0005 Dihydrolipoamide acetyltransferase, long form protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007800 [exp] 85 / 7e-17 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G198000 [exp] 72 / 3e-13 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.003G043900 [exp] 69 / 5e-12 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011867 [exp] 621 / 0 AT3G07060 621 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10022801 [exp] 619 / 0 AT3G07060 631 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10029840 [exp] 81 / 1e-15 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10020699 [exp] 81 / 2e-15 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G241366.2 pacid=42779375 polypeptide=Potri.002G241366.2.p locus=Potri.002G241366 ID=Potri.002G241366.2.v4.1 annot-version=v4.1 ATGGCGTATGCTTCTCATCTAATTAAGCATTCAAAAAAGTTACGAAATGTTTCCAGCTTAATGCGGCATGAGCATGCCGGATTGGTGCGTTGGTTATCAA ATGATTTTCACGTCTCCGGTGGTAAAAGAAATGTTATTGAGGAGTTAAATGTGCAAGAAAACATGAACTTTGACAATGGGATTTCTAGGCCCAAATTGAA AACCACCTGGGCGAAACAAGCTGAAGTTATCAAAGAACCTTACATGTGCTCTCCTCTCCAGAACCTACTTCTTTATTTCCCAGGATGTGTTTCTGCGGAT GAAAGTGGCAACCGCCTGTTCCTTTCTGACAGCAATCATCATCGCATTATTGTATCTGATGGCAATGGAAAGATTCTGGATTCGATTGGTTCTGGCCCAG GATTTGAGGATGGAGAATTTGAGTCTGCCAAGCTAGCACGTCCTGCAGCTTCCTTTTATGATGATGAGGAGGATTGCCTGTATATTGTAGATTCAGAAAA CCATGCCATCAGGAGAGCTGATCTGGAGAGTCGGGTTTTAGAGACAGTTTATCCAAAAAGCTTCAGTAAGAAAAATAATAGTATTTGGACCTGGATTATG GATAAGCTGGGTTCTAGAATTAATGTTGATGCAAAATCTGAAGAATTTGATTCACAGCCTCTGGTGTTCCCTTGGCACCTGTTGAAGTCCGTGGATAATA CTTTCTTAATCATCAGCCGGAGCTTTGAAACTCTGTGGGTCATAGATTTAGTGTCAGGAGAGATGAAAGAATGCATCAAAGGATTTCCCAACATTTTGGA GACTTGTGGACAGTTGATCACAGGGAAAGTATCCCTTTTGAAACAGCTACCAATTGATTACTTGAAACAGCAGACTGATGTAAACTGTTCACTGAAGGAA TTTCCATATGCTACTCTTGTATCAAACTTAACAACCTTTGAGAATGACATTGTCTTGTGTGACACAGTTGCACATAGAGTTCTTAAAATAAGTAGAGAAT CCGGTGCCTGTTCGAACTTCCAGTTATCAAATTTTGGGATTCTTGGATTACCTTTCTGGCTATCATTCCCTGTGGAGAGAGTTTATTCTGTTGCTGGAGC ATCGGCCGATCATATTGAGCACGTCAGCTTGTTACCAGGAAGGGTTGACATAAGGTTAAATATAGACATCCCTATGGATACCGAGCTTGTTGAACCATTA CAAGAAGGATGTATATGGCGCCAGGCAAGAGGGTCTGCTACAGTCATCTTAGGAGCAGAAGATGTAGTGGGATCCTCAGAGAAGGCTGGTGTTTCCCAAC AGTGGTATGATGAATTGGATAATCTGGCATTTTCAACTCCTGGATTAGAGATGGCTACTGAAGAGGATAGTGCAACCTCTGATGTCAATTACCAGGATGA GAGACTCCATATTGATTGCGCTGTCAACACTAGTCCCGGGACAAGTGAGCTTATTATACATGCGGCACTGTATCTAAAACTAAGAAGGCATCTTGATCTG GAAGAGGGTGGACAGCAGAAATATGCTGCGAGGATAGCTGATATTTTGAACCCTGGAAGAGGTGAAGGACTGGAAAAAGATTCATGCATTCAGCTCTTGT TAAAATCGAACTGTAATTTGAGAGACCTCATCTTTGTGAAACCCTTGCATTTGAGGATAAATTTGGATACCCTGGATCACCCAAAAGCTGATAATTCAAA AGATATCATCTTAACAGACTCTGCCATTGAAGTCAATGTATCTCTCTAG
AA sequence Show only first row Show all	>Potri.002G241366.2 pacid=42779375 polypeptide=Potri.002G241366.2.p locus=Potri.002G241366 ID=Potri.002G241366.2.v4.1 annot-version=v4.1 MAYASHLIKHSKKLRNVSSLMRHEHAGLVRWLSNDFHVSGGKRNVIEELNVQENMNFDNGISRPKLKTTWAKQAEVIKEPYMCSPLQNLLLYFPGCVSAD ESGNRLFLSDSNHHRIIVSDGNGKILDSIGSGPGFEDGEFESAKLARPAASFYDDEEDCLYIVDSENHAIRRADLESRVLETVYPKSFSKKNNSIWTWIM DKLGSRINVDAKSEEFDSQPLVFPWHLLKSVDNTFLIISRSFETLWVIDLVSGEMKECIKGFPNILETCGQLITGKVSLLKQLPIDYLKQQTDVNCSLKE FPYATLVSNLTTFENDIVLCDTVAHRVLKISRESGACSNFQLSNFGILGLPFWLSFPVERVYSVAGASADHIEHVSLLPGRVDIRLNIDIPMDTELVEPL QEGCIWRQARGSATVILGAEDVVGSSEKAGVSQQWYDELDNLAFSTPGLEMATEEDSATSDVNYQDERLHIDCAVNTSPGTSELIIHAALYLKLRRHLDL EEGGQQKYAARIADILNPGRGEGLEKDSCIQLLLKSNCNLRDLIFVKPLHLRINLDTLDHPKADNSKDIILTDSAIEVNVSL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Potri.002G241366 [exp]	0	1
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	2.44	0.8742
					Potri.002G067900 [exp]	3.87	0.8371
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	6.00	0.8466
AT4G28020			unknown protein		Potri.018G096900 [exp]	6.16	0.8264
AT3G09720			P-loop containing nucleoside t...		Potri.019G064900 [exp]	6.92	0.8503
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122866 [exp]	8.94	0.8615
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	9.16	0.8086	Pt-ARP4.1
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	15.96	0.8692
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	18.33	0.8534
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.002G192800 [exp]	24.97	0.8100

Compare expression of checked genes

Potri.002G241366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.