Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07070 544 / 0 Protein kinase superfamily protein (.1) AT3G24790 502 / 2e-178 Protein kinase superfamily protein (.1) AT4G13190 486 / 1e-171 Protein kinase superfamily protein (.1) AT5G18610 488 / 8e-171 Protein kinase superfamily protein (.1.2) AT5G13160 473 / 8e-166 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 465 / 9e-164 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 450 / 2e-157 Protein kinase superfamily protein (.1) AT1G07870 435 / 5e-151 Protein kinase superfamily protein (.1.2) AT5G16500 437 / 7e-149 Protein kinase superfamily protein (.1) AT3G02810 432 / 2e-148 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G205700 [exp] 491 / 6e-172 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 484 / 2e-171 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 489 / 4e-171 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 483 / 3e-169 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 479 / 4e-168 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 474 / 3e-167 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 466 / 3e-164 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 465 / 2e-163 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 454 / 2e-159 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011866 [exp] 554 / 0 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 495 / 2e-173 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 493 / 2e-172 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 485 / 3e-171 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 480 / 3e-169 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 479 / 5e-169 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 477 / 3e-167 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10022799 [exp] 471 / 7e-165 AT3G07070 487 / 2e-171 Protein kinase superfamily protein (.1) Lus10036499 [exp] 469 / 8e-165 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 451 / 3e-158 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G241600.1 pacid=42779047 polypeptide=Potri.002G241600.1.p locus=Potri.002G241600 ID=Potri.002G241600.1.v4.1 annot-version=v4.1 ATGGGTTGCTTTTGTTGTTTTTCATCTAATGAGAATAATGTAGATAGGAGGAGAAATGGTTCAAGAAGATCAGCTCAGCCACCTGCGTATCCTCCTCGGA ACGATCACAATAATATTGCACCACAACCGGAGAATTGCAAGCCAAGACCCCCACCTGAATCTAATGACAACAAGGATGCTCGTGATCATAAAGAAGCTGC CAACGGTAGCAGTAATGTCATTGCAGCACAAACCTTCACTTTCCGTGAGCTGGCCATGGCTACAAAGAATTTCCGACGGGAATGTCTAATTGGTGAAGGT GGATTTGGTAGAGTTTACAAGGGAAAACTTGACAAAGGTGGCCAGGTTGTGGCTGTGAAGCAACTTGATAGGAATGGTTTGCAAGGGAACAGAGAGTTTC TTGTTGAGGTGTTAATGTTGAGTCTATTGCACCATCAGAATCTAGTAAATCTCGTCGGATACTGCGCAGACGGGGATCAAAGACTTCTGGTGTATGAGTA CATGCCAAAGGGATCTCTTGAAGACCATCTACTAGATCTTACACCTGAGCAAAAGCCATTAGATTGGTTCTCAAGAATGAAAATAGCATTAGGAGCTGCA AAAGGTTTAGAATACTTGCACGATAAGGCCAATCCCCCTGTTATATATCGTGATTTGAAATCATCAAACATCTTGCTGGACAAATTCTTTAATGCCAAAC TCTCTGATTTCGGGCTAGCAAAGCTTGGACCTGTTGGGGAAAAGTTACACGTATCTTCAAGGGTGATGGGAACATACGGTTATTGTGCACCAGAGTATCA AAGAACTGGGCAACTTACAGTCAAGTCAGATGTGTACAGTTTTGGAGTTGTTTTTCTGGAGTTAATTACTGGAAAGAGAGTCATTGACACGACAAGACAA AACAATGAGCAAAATCTAGTTGCTTGGGCACAACCAGTATTCAAGGAACCAAGTAGATACCCAGAACTAGCCGATCCACTTCTACAGGGTGATTTTCCTG TTAGAGGCTTAAATCAAGCAGTTGCAGTTGCAGCCATGTGTCTCCAGGAGGAACCATTGGTTCGTCCATTGATCAGTGATGTGGTCTCTGCTCTTGGTTT GCTTGGAGATGGTCTAGAAGGAGGAGCAGAACCAGCTGCTTCTTTTCCTTCCCCGCCAACCATGGAAACCCTTGACAGTGCAAAAGAACGTCAACTAGCT GTGGACGAAGCCATAGAATGGGGATCAAATTCAAGGCGTTTGGCGTCGCAGAGTCCAAGGGCTACGGTGTCGTAG
AA sequence Show only first row Show all	>Potri.002G241600.1 pacid=42779047 polypeptide=Potri.002G241600.1.p locus=Potri.002G241600 ID=Potri.002G241600.1.v4.1 annot-version=v4.1 MGCFCCFSSNENNVDRRRNGSRRSAQPPAYPPRNDHNNIAPQPENCKPRPPPESNDNKDARDHKEAANGSSNVIAAQTFTFRELAMATKNFRRECLIGEG GFGRVYKGKLDKGGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLVGYCADGDQRLLVYEYMPKGSLEDHLLDLTPEQKPLDWFSRMKIALGAA KGLEYLHDKANPPVIYRDLKSSNILLDKFFNAKLSDFGLAKLGPVGEKLHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVFLELITGKRVIDTTRQ NNEQNLVAWAQPVFKEPSRYPELADPLLQGDFPVRGLNQAVAVAAMCLQEEPLVRPLISDVVSALGLLGDGLEGGAEPAASFPSPPTMETLDSAKERQLA VDEAIEWGSNSRRLASQSPRATVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07070			Protein kinase superfamily pro...		Potri.002G241600 [exp]	0	1
AT1G03687			DTW domain-containing protein ...		Potri.013G132100 [exp]	9.64	0.7632
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	14.69	0.8001
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	25.47	0.7348
					Potri.017G065250 [exp]	35.07	0.7308
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	37.68	0.6750
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	54.44	0.7314
AT5G08450			unknown protein		Potri.018G145552 [exp]	54.69	0.7280
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	56.92	0.7068
AT4G25410	bHLH	bHLH126	basic helix-loop-helix (bHLH) ...		Potri.001G113400 [exp]	96.14	0.6975
AT2G24060			Translation initiation factor ...		Potri.006G182000 [exp]	113.99	0.6747

Compare expression of checked genes

Potri.002G241600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.