Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 899 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 462 / 3e-150 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 111 / 3e-25 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 102 / 3e-23 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 84 / 3e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 81 / 1e-15 TAF5 TBP-associated factor 5 (.1) AT1G61210 81 / 3e-15 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G62020 79 / 8e-15 Coatomer, alpha subunit (.1) AT5G16750 77 / 2e-14 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G13480 77 / 2e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049400 [exp] 939 / 0 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 929 / 0 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.018G033300 [exp] 437 / 4e-140 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G248100 [exp] 435 / 6e-140 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 356 / 2e-112 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 104 / 2e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 103 / 7e-23 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 88 / 1e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 84 / 2e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022797 [exp] 1101 / 0 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 1091 / 0 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10043135 [exp] 907 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 905 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 392 / 4e-123 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 383 / 2e-120 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10021059 [exp] 117 / 3e-27 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 110 / 4e-26 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 109 / 6e-26 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 111 / 2e-25 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.002G241800.1 pacid=42779073 polypeptide=Potri.002G241800.1.p locus=Potri.002G241800 ID=Potri.002G241800.1.v4.1 annot-version=v4.1 ATGGCGCAGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTATATATTCATGATTATTTGCTGAAGAGAAAATTGCATAATTCTGCGAAAGCTTTTA TGGCGGAAGGGAAGGTTGCCACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTGTTTGAATGGTGGTCTGTCTTCTGGGATATTTTTATAGCAAG GACCAATGAAAAACATTCTGACGCTGCTGCGGCATATATAGAGGCACAACAAAGTAAGACAAGGGAGCAACAACAGATGCAATTGCAACTCATGCAGCGT CACAATGCTCAGATGCAGCGAAGGGATCCTAGTCATCCAGCTCTTTCTAGTTCTCTAAATGCTATGAACCCTGAAGGGATGATGGGGCAGCCATCAGCCA GTGTATTGGCTATGAAAATGTATGAAGAACGTATGAAACACCCTCACTCTATGGACTCTGAGACATCACCAGCTCTAATTGATGCCAATAGGCTGTCCCT GCTTAAATCACCAACTGTTCAACAAGGCCAGCTAGCACAGGGTAATTCTGGGAACATGTCGGCTTTGCAGCAAATCCAGGCTCGAACTCCACTGATAACT GACATCAAAAGTGAGATTAATTTGGGCCCAACTCAGAAAAGTTTGCCTATGGATCCCTCATCCATCTATGGACAAGCAATTTTGCAATCAAAGTCTGGTC TAGGTGGAGCAGGACTAAATCAAGGTGTTACTGGTCTTCCTCCATTGAAGGGCTGGCCACTAACTGGAATCGAGCATTTACGGCCAAGTTTGGGTGGACA AATGCAGAAGCCTAATCTGCAGACTCAAAATCAGTTTCTTTTGGCTTCACAACAACAGCAGGTCTTGGCACAGGCTCAAGCACAAAGCAACCTTGGAAAT TCAGCTAACTATGGAGACTTGGATCCACGAAGGCTAAGTCAGTTGCCTAGAAGTAGCTTGAATGCAAAAGATGGCCAATCCACAAGAAATGATGGGTCTA TATGTTCTCCAGTTCAATCAAGTTCACCAAAGATGAAGATGACCCAGATGCAGCACCCTTCGTCTCAACAGCAGGACCAATTGCAGCAGCAGCAGCAGGT TACTAACAGGAAAAGGAAGCAACACTCCTCTTCTGGACCTGCTAACAGCACCTGTACAGGAAATACAGCGGGTCCATCACCCAACTCTCCTCCATCAACT CATACCCCTGGTGATGGAATGCGAACAACCAGTAGTTTTCAGCATGCTAAAAGTGTGCCAAAAAGCTTGATGATGTATGGTCCAGAAGGGACTGGAAGTC TTGCATCATCTTCCAATATAATGGAAGACATGGATCGTTTTGGAGATATTGCTGCTCTAGATGATAGTATGGAACAGTTTCTTGCACCCGATGGAGATGG AAGGGACTTGTATGGAACAGTAAAGCAAAGTCTCAGTGAGAACCAAAAGGAGTCTTCTAAAGGTTTTACTTTTGGTGAGGTTGGCTGCATACGGACAAGA AATAGCAAGGTCACTTGCTGTCATTTTTCTTCAGATGGAAAGTTGCTGGCCAGTGCTGGACATGACAAGAAGGTTGTCCTGTGGAACATGGATAACCTGC AAACAGAGAACACCACTGAAGAGCATAAATCAGTCATCACAGATGTTCGTTTCAGGCCAAATTCGTCTCAGTTGGCTACATCTTCAGTTGATAAATCTGT GCGATTATGGGATGCAAACAATCCGAGCTATTGTTTGCATGAGTATACAGGGCATAGTTCACCTATCATGTCTCTAGACTTCCACCCCAAGAAAACTGAT CTTTTCTGTTTTAGTGACTATGACAACGAGATTCGTTATTGGAACATCAATCCATTCACAAGTGTTCGTGTCTCTAAGGGAGGGAATGCACAAGTGAGAT TTCAACCTAGAGATGGACATCTACTAGCTGCAGCATCAGAAAAAGTGGTGACCATCTTTGATGTCGAAACTGATAGGCAGATTCACTCATTCCAGGGGCA TTCTGAAATGGTAAACTACATATGCTGGGATTCAACTGGAGATATTTTGGCTTCGGTTAGTCAGAACTTGGTGAAGATTTGGTCGATGGCCTCAGGGGAT TGCATTCAAGAGCTCAGCTCCAATGGGAACCAGTTTCATTCTTGTGTTTTCCATCCAAGTTACTCCACTCTCTTGGTTATCGGAGGAATCTCATCGCTGG AGCTATGGAACATGGCCGAGAATAAGAGCATGACAATCCCGGGGCATGAGAACATAATCGCAGCCCTGGCGCAGTCACCTGTCACTGGGATGGTTGCTTC TGCAAGCCATGACAGCACTGTCAAGTTATGGAAATAA
AA sequence Show only first row Show all	>Potri.002G241800.1 pacid=42779073 polypeptide=Potri.002G241800.1.p locus=Potri.002G241800 ID=Potri.002G241800.1.v4.1 annot-version=v4.1 MAQQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMAEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDAAAAYIEAQQSKTREQQQMQLQLMQR HNAQMQRRDPSHPALSSSLNAMNPEGMMGQPSASVLAMKMYEERMKHPHSMDSETSPALIDANRLSLLKSPTVQQGQLAQGNSGNMSALQQIQARTPLIT DIKSEINLGPTQKSLPMDPSSIYGQAILQSKSGLGGAGLNQGVTGLPPLKGWPLTGIEHLRPSLGGQMQKPNLQTQNQFLLASQQQQVLAQAQAQSNLGN SANYGDLDPRRLSQLPRSSLNAKDGQSTRNDGSICSPVQSSSPKMKMTQMQHPSSQQQDQLQQQQQVTNRKRKQHSSSGPANSTCTGNTAGPSPNSPPST HTPGDGMRTTSSFQHAKSVPKSLMMYGPEGTGSLASSSNIMEDMDRFGDIAALDDSMEQFLAPDGDGRDLYGTVKQSLSENQKESSKGFTFGEVGCIRTR NSKVTCCHFSSDGKLLASAGHDKKVVLWNMDNLQTENTTEEHKSVITDVRFRPNSSQLATSSVDKSVRLWDANNPSYCLHEYTGHSSPIMSLDFHPKKTD LFCFSDYDNEIRYWNINPFTSVRVSKGGNAQVRFQPRDGHLLAAASEKVVTIFDVETDRQIHSFQGHSEMVNYICWDSTGDILASVSQNLVKIWSMASGD CIQELSSNGNQFHSCVFHPSYSTLLVIGGISSLELWNMAENKSMTIPGHENIIAALAQSPVTGMVASASHDSTVKLWK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	0	1
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	4.35	0.8748
AT3G56680			Single-stranded nucleic acid b...		Potri.010G237500 [exp]	5.83	0.8709
AT4G30770			Putative membrane lipoprotein ...		Potri.007G103000 [exp]	5.91	0.8611
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Potri.014G192500 [exp]	6.70	0.8539
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	7.14	0.8679
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G020900 [exp]	10.67	0.8320	Pt-RGA.59
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	11.22	0.8546
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.008G178200 [exp]	11.66	0.8623
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	11.66	0.8610
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.010G027201 [exp]	12.96	0.8459

Compare expression of checked genes

Potri.002G241800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.