Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24800 314 / 2e-103 PRT1 proteolysis 1 (.1) AT1G18660 53 / 3e-07 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT1G74990 48 / 1e-06 RING/U-box superfamily protein (.1) AT1G02860 45 / 7e-05 BAH1, NLA nitrogen limitation adaptation, BENZOIC ACID HYPERSENSITIVE 1, SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G19310 44 / 8e-05 RING/U-box superfamily protein (.1) AT2G42030 45 / 9e-05 RING/U-box superfamily protein (.1) AT4G21070 45 / 0.0001 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT4G03510 44 / 0.0001 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G58030 43 / 0.0003 RING/U-box superfamily protein (.1.2.3.4) AT4G27470 42 / 0.0004 ATRMA3 RING membrane-anchor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G178700 [exp] 320 / 5e-105 AT3G24800 269 / 9e-86 proteolysis 1 (.1) Potri.001G049300 [exp] 222 / 5e-69 AT3G24800 199 / 7e-61 proteolysis 1 (.1) Potri.012G068100 [exp] 51 / 1e-06 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.004G042700 [exp] 45 / 4e-05 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.001G358100 [exp] 46 / 5e-05 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.011G120800 [exp] 44 / 0.0001 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1) Potri.015G084000 [exp] 44 / 0.0002 AT4G24690 490 / 5e-164 Arabidopsis thaliana next to BRCA1 gene 1, ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein (.1) Potri.001G401600 [exp] 44 / 0.0002 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.002G133000 [exp] 43 / 0.0002 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025930 [exp] 298 / 6e-97 AT3G24800 287 / 2e-93 proteolysis 1 (.1) Lus10038169 [exp] 306 / 1e-94 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015722 [exp] 53 / 4e-07 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 51 / 2e-06 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10036151 [exp] 46 / 6e-05 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10011184 [exp] 44 / 0.0002 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10016303 [exp] 44 / 0.0002 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 44 / 0.0002 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10018489 [exp] 43 / 0.0002 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10022569 [exp] 42 / 0.0004 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [poplar] [flax] C1 PF00569 [poplar] [flax] ZZ Zinc finger, ZZ type CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G241900.8 pacid=42777764 polypeptide=Potri.002G241900.8.p locus=Potri.002G241900 ID=Potri.002G241900.8.v4.1 annot-version=v4.1 ATGGGAAAAGGTAAAGTGATTGACGACGCCGTCATGAATTTCGCAGTGACCGGGAAAGATCATCACTTCCTCGTCGATGCTGATCTTGAGGAGGAATTCT CCGATTCCTTCCGTTGTTCCGTCTGCCTGGATCTTCTATACAAACCCATTGTGCTCTCTTGCGGCCACATTTCCTGTTTCTGGTGTGTTCACAAATCTAT GAGTGGTCTGAGGGAGTCTAATTGTCCAATTTGCAGGCATCCATATAATCACTTTCCAACCATTTGTCAGATGCTGCACTTCTTGCTCTTCAAGTTGTAT CCTATGGTGTATACGAGGAGGGAAGAGCAAACTCTAGAGGAAGAGATGGAAATGGGCTTCTTCTCACCACAATTTGGCTATAAAGAATGCAACAGTGATC TAAAACATCATCATCCAAGGGATCGAAAGCATGCACTAGACAGTTGCTTCTTCAGGAATGGGGAATTTTGTGGAAGTACACAACAAATAGAGTCTGTTAA GTCTGTTTCCATGATTCAAGCTCCCACTATGTCTATTCCAAACAAAGTTTGTGATGAAAATTGCTGCATGATCAAACCTGACAGTGTTGAAGAAAACAAT TTGCCTGAAGATAAGTCGAACAGAAATTGCAAGCAGGTTTCAATTGCTGATGTACAATGCAGCACATGCAAACAGCTTCTTTTTCATCCAGTGGTTCTTA ATTGTGGCCATGTGTATTGTGAAACTTGCATTGGTCCAGTGAATGAGATGCTTACATGCCAAGTTTGTCAGAGTTTGCATCCAAGGGGTTTTCCAAAAGT GTGTTTGGAGTTTGATCATTTTCTAGAGGAATACTTCCCTACAGAATATGCCATGAGAATAGAAGCTGTTCAGGCCAAACAAGTGCCTGTCAAGTTTCAG CACCCAATCACTTGTTCTACTAAGGCTAGTGAAAAGAGTTTTCAATCATCCTCAGCAACCACAAGAGAGAATTTATCATGGCGGGCTGACCCACACTCAA AGGTTCATGTTGGAGTTGGTTGCGATTCTTGTGGGGTATATCCAATAGTTGGGGATAGATACAAGTGCAAAGATTGTGTTGAGGAAATAGGTTTTGATCT TTGTGGAGACTGCTACAATACTTGCTCCAAGCGACCTGGACGGTTCAATCAGCAGCATACCTCGGAACACAAGTTTGAGCTTGTAAAGTCAAATATTATT CATAATATAATGTTGAGGTTGGTGACTGGACAGTTGGATAGTGCTTCTGCTTTTGCCAACCACGATGATGCTTCAGGAATTTCTGAAAATGAATCCCCTG CTCCCATTTTGTCTGGCGATGCTCAAGACAGTAGCAGGAACAGTTTGGCTAGTGCTGTGACCCACCCTGATAGTGCAGAGGATGAAAACGAGACCCAAAC AACCAGGTAA
AA sequence Show only first row Show all	>Potri.002G241900.8 pacid=42777764 polypeptide=Potri.002G241900.8.p locus=Potri.002G241900 ID=Potri.002G241900.8.v4.1 annot-version=v4.1 MGKGKVIDDAVMNFAVTGKDHHFLVDADLEEEFSDSFRCSVCLDLLYKPIVLSCGHISCFWCVHKSMSGLRESNCPICRHPYNHFPTICQMLHFLLFKLY PMVYTRREEQTLEEEMEMGFFSPQFGYKECNSDLKHHHPRDRKHALDSCFFRNGEFCGSTQQIESVKSVSMIQAPTMSIPNKVCDENCCMIKPDSVEENN LPEDKSNRNCKQVSIADVQCSTCKQLLFHPVVLNCGHVYCETCIGPVNEMLTCQVCQSLHPRGFPKVCLEFDHFLEEYFPTEYAMRIEAVQAKQVPVKFQ HPITCSTKASEKSFQSSSATTRENLSWRADPHSKVHVGVGCDSCGVYPIVGDRYKCKDCVEEIGFDLCGDCYNTCSKRPGRFNQQHTSEHKFELVKSNII HNIMLRLVTGQLDSASAFANHDDASGISENESPAPILSGDAQDSSRNSLASAVTHPDSAEDENETQTTR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	0	1
AT4G19070			Putative membrane lipoprotein ...		Potri.001G132400 [exp]	2.44	0.7942
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	4.35	0.7350
AT1G50180			NB-ARC domain-containing disea...		Potri.005G009201 [exp]	21.16	0.7395
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	26.72	0.6460
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	26.72	0.7138
AT5G44250			Protein of unknown function DU...		Potri.014G031800 [exp]	26.98	0.6514
AT5G24810			ABC1 family protein (.1.2)		Potri.018G004500 [exp]	32.64	0.7229
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	36.93	0.7531
					Potri.017G065250 [exp]	39.42	0.7346
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Potri.004G140900 [exp]	42.60	0.6325	Pt-CYP707.5

Compare expression of checked genes

Potri.002G241900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.