Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CHI3.10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 388 / 2e-136 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165700 [exp] 494 / 2e-178 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091700 [exp] 482 / 7e-174 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.014G091600 [exp] 438 / 2e-156 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 389 / 5e-137 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.012G033866 [exp] 376 / 7e-132 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024000 [exp] 373 / 8e-131 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 373 / 1e-130 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024150 [exp] 367 / 3e-128 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G023900 [exp] 367 / 3e-128 AT5G24090 329 / 3e-113 chitinase A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009215 [exp] 437 / 4e-156 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 436 / 1e-155 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10040420 [exp] 436 / 2e-155 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10040419 [exp] 429 / 1e-152 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009216 [exp] 422 / 6e-150 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10023534 [exp] 421 / 2e-149 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10037985 [exp] 419 / 6e-149 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10001868 [exp] 383 / 1e-134 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 367 / 3e-128 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037984 [exp] 360 / 1e-123 AT5G24090 322 / 1e-108 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.002G242000.1 pacid=42778974 polypeptide=Potri.002G242000.1.p locus=Potri.002G242000 ID=Potri.002G242000.1.v4.1 annot-version=v4.1 ATGGCTTTCAAGCTCTCAATTTCTCTTGCTCTTCTTGCAATTCTTGTACTGGTGGTGGGTTCCGAAGCTGGTGGAATAGCGGTTTACTGGGGTCAGAACG GCAATGAGGGCACCTTGGCGGAGACTTGTGCCACCGGAAACTACGACTACGTAATCCTAGCGTTCCTCCCGACTTTTGGAAATGGTCAGACTCCGATGAT TAATCTCGCTGGTCATTGCGATCCATACAGCAATGGCTGCACAAAATTAAGCCCGGACATAAAATCATGTCAAGTCAAAGGCATCAAGGTGATGCTCTCT ATTGGAGGAGGAGCTGGGAGCTACTACCTCACCTCAAAGGAGGATGCAAAGCAAGTGGCGAACTACCTTTGGAATAACTTCCTGGGAGGAAATTCTTCGT CTCGCCCACTCGGCCCAGCTGTTCTTGATGGAATTGACTTCGATATTGAAGGAGGGACAGACCAGCACTGGGATGATCTTGCCAGGTTCCTTTCAGCTTA TAGCAAGCAAGGTAAAAAGGTGCACCTAACTGCAGCTCCTCAGTGCCCATTTCCTGATGCTTGGGTAGGAAATGCACTGCAGACAGGTCTCTTTGACTAC GTCTGGGTTCAATTCTACAACAATCCTCCTTGCCAATTCTCCGGGGATATTGCCAATCTTGAAGATGCATGGAAGCAATGGATTTCAAGCATCCCAGCTC AAAAAATCTTCCTGGGATTGCCTGCTGCTCCTGATGCAGCTGGAAGTGGCTTCGTTCCTGTAGCTGACCTTACTTCCAAAGTGCTTCCAGCAATCAAGGG CTCTGCAAAATATGGTGGTGTTATGCTGTGGTCCAAGTACTATGATGATCAAACTGGCTATAGTAAATCAATCAAGAGCCGCGTCTGA
AA sequence Show only first row Show all	>Potri.002G242000.1 pacid=42778974 polypeptide=Potri.002G242000.1.p locus=Potri.002G242000 ID=Potri.002G242000.1.v4.1 annot-version=v4.1 MAFKLSISLALLAILVLVVGSEAGGIAVYWGQNGNEGTLAETCATGNYDYVILAFLPTFGNGQTPMINLAGHCDPYSNGCTKLSPDIKSCQVKGIKVMLS IGGGAGSYYLTSKEDAKQVANYLWNNFLGGNSSSRPLGPAVLDGIDFDIEGGTDQHWDDLARFLSAYSKQGKKVHLTAAPQCPFPDAWVGNALQTGLFDY VWVQFYNNPPCQFSGDIANLEDAWKQWISSIPAQKIFLGLPAAPDAAGSGFVPVADLTSKVLPAIKGSAKYGGVMLWSKYYDDQTGYSKSIKSRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G242000 [exp]	0	1	Pt-CHI3.10
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G063900 [exp]	1.00	0.9808
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.006G222600 [exp]	13.34	0.9765
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.012G093900 [exp]	15.84	0.8789
					Potri.006G008900 [exp]	16.30	0.9368
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	20.34	0.9062	Pt-HA1.5
					Potri.005G130750 [exp]	21.07	0.9637
AT1G52190			Major facilitator superfamily ...		Potri.012G087500 [exp]	22.18	0.9213
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G106000 [exp]	24.55	0.9107	PtrAMT4-5
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.004G080400 [exp]	24.57	0.9627
					Potri.005G224300 [exp]	29.32	0.9617

Compare expression of checked genes

Potri.002G242000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.