Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48820 178 / 4e-56 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT2G32710 122 / 7e-34 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT3G24810 100 / 3e-26 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1) AT1G49620 70 / 1e-14 ICN6, ICK5, KRP7 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) AT3G19150 67 / 1e-13 ACK1, ICK4, KRP6 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2) AT2G23430 46 / 4e-06 ICK1, KRP1 KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) AT3G50630 43 / 6e-05 ICK2, KRP2 KIP-related protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314000 [exp] 179 / 3e-56 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.017G054000 [exp] 164 / 1e-50 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.009G103600 [exp] 72 / 4e-15 AT1G49620 92 / 6e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.004G142100 [exp] 70 / 1e-14 AT1G49620 91 / 7e-23 KIP-RELATED PROTEIN 7, Cyclin-dependent kinase inhibitor family protein (.1) Potri.007G042300 [exp] 52 / 6e-08 AT2G23430 / KIP-RELATED PROTEIN 1, Cyclin-dependent kinase inhibitor family protein (.1) Potri.005G137500 [exp] 52 / 7e-08 AT3G19150 50 / 2e-07 ARABIDOPSIS CDK INHIBITOR 1, KIP-related protein 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011862 [exp] 160 / 7e-49 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10043139 [exp] 155 / 7e-47 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 144 / 3e-42 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10022796 [exp] 110 / 1e-29 AT5G48820 94 / 4e-23 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02234 [poplar] [flax] CDI Cyclin-dependent kinase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G242100.1 pacid=42777035 polypeptide=Potri.002G242100.1.p locus=Potri.002G242100 ID=Potri.002G242100.1.v4.1 annot-version=v4.1 ATGGGCAAGTACATGAAGAAATCCAAAATCACAAGCGATGTTGTTGCTGTCATGGAAGTAACCTCTGGTGTCCGTACAAGAGCCAAAACCCATGCTTTAC AGCTACTCCAGTCTCCTGTTTCTTCTAACCCAGATGCTACTTCCACCTGTTACCTCCAGCTAAGGAGCCGCCGCCTGGAAAAACCACCGCCACTCTTCAA TGCTGAAACCAAAAGGAACCCCGCCAAGGAGAAGGACAGTTTCAGCTGTAAAGGGGCTTCTAGGCTGAGAGTGAATTCTTCCAGCACTACTGGTGATTGC GATGAAAAGGGCACTGGAAAGTCGGGTTTCAAATGTGAAACAGAGGATTCTGGAAGTTTAAAAGAGGCTTCTTCTGGAGACAACTGTTTCTATTTCGAAA GGTGCACCAGGGAAAGCACACCATGTAGCTTGATAAGGGACTCAGAAACCATAGCAACCCCGGGTTCAACCACAAGACAGAGAAGCTCAACTGCGGGCAG CCAGAGACTTTTGAACACGCAGAGAAATATCCCGACAACATGTGAAATGGATGAGTTTTTTGCTGGTGTAGAACAGCAACAGCAGAGACTATTTATTGAG AAGTACAACTTTGATATCGTGAATGATCTGCCGCTATCTGGGCGCTACGAATGGGTCCGAGTAATCCCTTGA
AA sequence Show only first row Show all	>Potri.002G242100.1 pacid=42777035 polypeptide=Potri.002G242100.1.p locus=Potri.002G242100 ID=Potri.002G242100.1.v4.1 annot-version=v4.1 MGKYMKKSKITSDVVAVMEVTSGVRTRAKTHALQLLQSPVSSNPDATSTCYLQLRSRRLEKPPPLFNAETKRNPAKEKDSFSCKGASRLRVNSSSTTGDC DEKGTGKSGFKCETEDSGSLKEASSGDNCFYFERCTRESTPCSLIRDSETIATPGSTTRQRSSTAGSQRLLNTQRNIPTTCEMDEFFAGVEQQQQRLFIE KYNFDIVNDLPLSGRYEWVRVIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.002G242100 [exp]	0	1
AT2G28270			Cysteine/Histidine-rich C1 dom...		Potri.001G229900 [exp]	11.31	0.7299
AT4G22150		PUX3	plant UBX domain-containing pr...		Potri.004G004200 [exp]	14.49	0.7208
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	16.91	0.7572
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Potri.006G005700 [exp]	24.65	0.7186
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.013G070600 [exp]	25.49	0.6985
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.011G155700 [exp]	29.49	0.7235
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	35.32	0.6815	B5.2
					Potri.001G042800 [exp]	36.33	0.7073
AT4G26840		ATSUMO1, SUMO1,...	ARABIDOPSIS THALIANA SMALL UBI...		Potri.002G224700 [exp]	36.98	0.7064	Pt-SUM1.1
AT1G75330		OTC	ornithine carbamoyltransferase...		Potri.005G229400 [exp]	36.98	0.7097

Compare expression of checked genes

Potri.002G242100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.