Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24820 168 / 3e-53 BSD domain-containing protein (.1) AT1G69030 116 / 6e-32 BSD domain-containing protein (.1) AT1G26300 110 / 1e-29 BSD domain-containing protein (.1.2) AT5G65910 46 / 5e-06 BSD domain-containing protein (.1) AT1G10720 45 / 8e-06 BSD domain-containing protein (.1) AT3G49800 45 / 1e-05 BSD domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111900 [exp] 132 / 6e-38 AT1G69030 281 / 6e-94 BSD domain-containing protein (.1) Potri.010G137900 [exp] 123 / 2e-34 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2) Potri.014G008400 [exp] 52 / 4e-08 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1) Potri.007G006400 [exp] 49 / 5e-07 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1) Potri.014G014200 [exp] 44 / 2e-05 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038170 [exp] 179 / 6e-58 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1) Lus10025929 [exp] 178 / 4e-57 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1) Lus10036831 [exp] 125 / 2e-35 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2) Lus10019194 [exp] 124 / 2e-34 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2) Lus10011556 [exp] 47 / 3e-06 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1) Lus10019271 [exp] 47 / 3e-06 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [poplar] [flax] BSD BSD domain
Representative CDS sequence Show only first row Show all	>Potri.002G242200.3 pacid=42777569 polypeptide=Potri.002G242200.3.p locus=Potri.002G242200 ID=Potri.002G242200.3.v4.1 annot-version=v4.1 ATGGACTGGTCCTCGTGGCTTCTACGTAGTGTTTCAAGAAGTAGTGATAATAGCAAAAACAGCCAAAACTCAAATCAACAGATTCCAAAACCAGGAGGAG GAGGAGGAGAAGAGGAACAGCTAGGAGTCACGCAGCAATTGATCGATCATGTAAAGTCCTTCACAATTGACACTTTCAAGAACTTCCCACTCCAAGATGA GGCAACTCCTTCTTCAACGAAAACATCGTCCAATGTTCAAAGGGATCTCTCTGAATGGCAGGAGCGACATGCTACTCTTGTTCTTTCCAAAGCCAAGGAG CTTTCACATCTGAGATTTATGCTATGCCCTCGTCACTTGAAGGAGAGACAATTTTGGATGATATATTTTATGCTCGTCAAGAGTCATGTGGCTGAATACG AGCTGCATGCCATACGACTGGCTAAGCTTAAAATGATGGCAATAGAGAATGAAGAATCTTCAGATACGATTGGATTTGAAGTTGAAATGGCAGAAACAAA GCAATCAGCGAATTTAGCTCCTCCAACTTCATGA
AA sequence Show only first row Show all	>Potri.002G242200.3 pacid=42777569 polypeptide=Potri.002G242200.3.p locus=Potri.002G242200 ID=Potri.002G242200.3.v4.1 annot-version=v4.1 MDWSSWLLRSVSRSSDNSKNSQNSNQQIPKPGGGGGEEEQLGVTQQLIDHVKSFTIDTFKNFPLQDEATPSSTKTSSNVQRDLSEWQERHATLVLSKAKE LSHLRFMLCPRHLKERQFWMIYFMLVKSHVAEYELHAIRLAKLKMMAIENEESSDTIGFEVEMAETKQSANLAPPTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24820			BSD domain-containing protein ...		Potri.002G242200 [exp]	0	1
AT3G01820			P-loop containing nucleoside t...		Potri.001G333100 [exp]	2.82	0.8402
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.001G242300 [exp]	7.68	0.8006
AT5G14850			Alg9-like mannosyltransferase ...		Potri.018G098700 [exp]	12.60	0.7491
AT1G53035			unknown protein		Potri.011G119200 [exp]	15.58	0.8433
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G263000 [exp]	16.18	0.8549	Pt-UBQ11.1
AT3G62790			NADH-ubiquinone oxidoreductase...		Potri.002G204800 [exp]	17.32	0.8005
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.012G069300 [exp]	25.63	0.7928	ATHVA22.1
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076001 [exp]	36.33	0.7678
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.005G233400 [exp]	45.67	0.7137	Pt-PAP1.2
					Potri.001G280604 [exp]	48.73	0.8249

Compare expression of checked genes

Potri.002G242200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.