Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48800 899 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G03010 486 / 3e-165 Phototropic-responsive NPH3 family protein (.1) AT3G08570 468 / 1e-158 Phototropic-responsive NPH3 family protein (.1) AT2G47860 447 / 3e-150 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G08660 431 / 2e-144 Phototropic-responsive NPH3 family protein (.1) AT5G67385 431 / 3e-144 Phototropic-responsive NPH3 family protein (.1) AT2G30520 368 / 4e-120 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT1G30440 370 / 1e-119 Phototropic-responsive NPH3 family protein (.1) AT5G03250 350 / 5e-113 Phototropic-responsive NPH3 family protein (.1) AT5G13600 343 / 2e-110 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139900 [exp] 552 / 0 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 522 / 2e-179 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 513 / 8e-176 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 485 / 2e-165 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 411 / 4e-136 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 400 / 4e-132 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 385 / 3e-126 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 384 / 6e-125 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.017G048200 [exp] 380 / 1e-123 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025928 [exp] 941 / 0 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038169 [exp] 532 / 5e-179 AT5G48800 482 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10005943 [exp] 462 / 1e-155 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 401 / 7e-133 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 384 / 2e-125 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 384 / 2e-125 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 376 / 2e-122 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 374 / 2e-121 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10029102 [exp] 372 / 2e-121 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10013057 [exp] 371 / 3e-121 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.002G242300.5 pacid=42779329 polypeptide=Potri.002G242300.5.p locus=Potri.002G242300 ID=Potri.002G242300.5.v4.1 annot-version=v4.1 ATGGACAAACATCAGCAGCAGCAGCTGTCTTTGGCTAAGTGTTCCAGGCAGAAATACAGTGAATGGATTTTTCGGGATGTTCCTAGCGATATCACCATAG AAGTGAGCGGAGGGACATTTGCATTACACAAGTTCCCTCTAGTTTCTCGAAGTGGACGAATCAGAAAGTTGGTTGCAGAACATAGAGATGCCGATATCTC AAGGGTGGAGCTGCTTAATCTACCAGGAGGAGCAGAGGCGTTTGAGTTGGCTGCAAAATTCTGTTATGGCATTAACTTTGAAATTACATCTTCAAATGTT GCCCAGTTGTGCTGTGTCTCTGAATACCTTGAAATGACTGAAGATTTCTCCAAAGACAATCTTGGTTCTCGTGCAGAGGAGTATCTTGAGAGCATTGTTT GTAAGAATCTTGAAATGTGTGTTGAAGTTTTGCAACAATGCGAGAACCTAATCCCTCTTGCTGATGAGCTTAGGATAGTTAGCCGATGCATAGATGCCAT TGCCTCAAAGGCTTGTGCTGAGCAAATTGCCTCAAGTTTCTCACGCTTGGAGTATAGCAGCTCAGGGAGGCTGCACATGAACAAGCAAGCAAAAAGAGAA GGGGACTGGTGGATAGAAGATCTGTCTGTTCTCCGCATAGACTTATATCAAAGGGTCATGACGGCCATGAAGTGCCGTGGTGTCCGTCCTGAGAGTATTG GTGCATCACTGGTGAACTATGCTCAGAAGGAGTTGACAAAGAAATCCAGTTTATGGAATCCATCTAGCCAGACAAAAGTTGATCTGATATCAACTGGGCA TGAAAGACTTGTGGTTGAGACAATTGTTAACCTTCTGCCTGTTGAGAAACTTGCTGTTCCTATAACTTTTCTTTTTGGTCTTTTGCGAAGTGCTGTGATG CTTGATTGCACAATTGCTTGTAGGCTCGACCTAGAGAGGCGGATTGGTTCCCAGTTGGATGTTGCCACTCTTGATGATCTTTTGATCCCGTCGTTCAGGC ATGCAGGTGATACCTTATTTGATGTCGACACAGTCCATAGAATCTTGGTTAATTTCTCACAGCAAGATGATAGTGAAGATGACATGGAAGATGCTTCTGT TTTTGAATCTGATAGTCCTCATTCACCTTCTCAAACTGCTTTATTTAAAGTGGCAAAACTGGTTGACAATTATCTTGCTGAGATCGCTCCTGATGCAAAT CTCAAGCTTTCCAAGTTCATGGTCATTGCAGAGACTTTACCAACACATGCACGAACAGTTCATGATGGACTATACCGGGCAATTGATATTTACCTAAAAG CCCATCAGGGTTTATCAGACTCAGACAGGAAGAAGCTCTGCAAACTGATTGATTTCCAAAAGCTCTCGCAAGAAGCTGGAGCACATGCTGCGCAAAATGA ACGGCTACCCCTTCAAGCTATAGTTCAAGTGCTCTATTTTGAGCAAATAAGGCTCAGAAATGCTCTGTGCTGCTCTTATGCTGATGATGACCACAAGCCA ATGCACAATTCATGGCGAATTAGCAGTGGTGCACTCAGTGCAGCAATGTCTCCGCGAGACAACTATGCATCACTAAGGAGAGAAAACCGAGAGCTAAAAC TTGAGCTAGCTCGGTTGCGGATGAGATTAAATGATCTAGAGAAAGAACACGTTTGTATGAAGAGAGATATGCAAAAGTCTCATTCTCGTAAATTCATGAG TTCTTTCTCAAAGAAAATTGGTAAGCTTAGTATCTTTGGGCATAGTTCTTCAAGGGGATCAAGTTCTCCATCAAAAAATTCCCACAGAACAGATTCTAGA GTGATTGAGAGAACATGTGCCAGCACTGATTAG
AA sequence Show only first row Show all	>Potri.002G242300.5 pacid=42779329 polypeptide=Potri.002G242300.5.p locus=Potri.002G242300 ID=Potri.002G242300.5.v4.1 annot-version=v4.1 MDKHQQQQLSLAKCSRQKYSEWIFRDVPSDITIEVSGGTFALHKFPLVSRSGRIRKLVAEHRDADISRVELLNLPGGAEAFELAAKFCYGINFEITSSNV AQLCCVSEYLEMTEDFSKDNLGSRAEEYLESIVCKNLEMCVEVLQQCENLIPLADELRIVSRCIDAIASKACAEQIASSFSRLEYSSSGRLHMNKQAKRE GDWWIEDLSVLRIDLYQRVMTAMKCRGVRPESIGASLVNYAQKELTKKSSLWNPSSQTKVDLISTGHERLVVETIVNLLPVEKLAVPITFLFGLLRSAVM LDCTIACRLDLERRIGSQLDVATLDDLLIPSFRHAGDTLFDVDTVHRILVNFSQQDDSEDDMEDASVFESDSPHSPSQTALFKVAKLVDNYLAEIAPDAN LKLSKFMVIAETLPTHARTVHDGLYRAIDIYLKAHQGLSDSDRKKLCKLIDFQKLSQEAGAHAAQNERLPLQAIVQVLYFEQIRLRNALCCSYADDDHKP MHNSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEKEHVCMKRDMQKSHSRKFMSSFSKKIGKLSIFGHSSSRGSSSPSKNSHRTDSR VIERTCASTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	0	1
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	1.00	0.8646
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	1.73	0.8210
AT5G58010	bHLH	LRL3, bHLH082	LJRHL1-like 3 (.1)		Potri.006G135600 [exp]	2.82	0.8116
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	3.46	0.8134	Pt-SMO1.1
AT1G75060			unknown protein		Potri.014G041200 [exp]	4.00	0.8432
AT4G21450			PapD-like superfamily protein ...		Potri.019G116400 [exp]	6.32	0.8195
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	9.48	0.7906	Pt-NPGR2.1
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.003G204500 [exp]	10.00	0.8145
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	11.22	0.8125
AT4G23720			Protein of unknown function (D...		Potri.001G096000 [exp]	11.83	0.8081

Compare expression of checked genes

Potri.002G242300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.