Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32720 222 / 4e-76 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G48810 206 / 1e-69 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT5G53560 192 / 2e-64 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G26340 120 / 5e-36 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT2G46650 109 / 9e-32 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT1G37130 84 / 1e-19 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 79 / 4e-18 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 72 / 4e-17 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT3G61580 60 / 3e-11 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT2G46210 57 / 4e-10 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G054300 [exp] 214 / 5e-73 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 212 / 3e-72 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.012G024600 [exp] 137 / 1e-42 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 125 / 5e-38 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.010G156900 [exp] 117 / 8e-35 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G019200 [exp] 103 / 3e-29 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.002G088600 [exp] 84 / 1e-19 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 82 / 8e-19 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.018G087600 [exp] 74 / 7e-18 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011858 [exp] 229 / 7e-79 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 228 / 3e-78 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10043137 [exp] 201 / 1e-67 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 201 / 1e-67 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10008838 [exp] 194 / 6e-65 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 192 / 3e-64 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10005992 [exp] 135 / 7e-42 AT5G53560 144 / 2e-45 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10030219 [exp] 125 / 1e-37 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10036973 [exp] 116 / 3e-34 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10000651 [exp] 116 / 4e-34 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G242500.1 pacid=42777795 polypeptide=Potri.002G242500.1.p locus=Potri.002G242500 ID=Potri.002G242500.1.v4.1 annot-version=v4.1 ATGGGCGGCAACGGCAAGGTATTCACTTTGGCAGAGGTCTCCGCGCACAACAGCCCTAAGGATTGCTGGCTCGTCGTTGAGGGCAGGGTGTATGACGTGA CGAAATTCTTGGAAGACCATCCCGGTGGTGATGATGTTTTGCTGTCAGCCACAGGAAAGGACGCAACTGATGATTTTGAGGATGTTGGTCACAGTAGCAC TGCAAGAGCACTGATGGATGAGTTTTACGTAGGTGATATTGATACAGCAACCATCCCTACCAGCGTCAAGTACACTCCTCCTAAACAACCTCACTACAAC CAAGACAAGACACCAGAATTCATCATCAAGCTCCTGCAGTTCCTTGTCCCCCTGATAATCTTGGCTGTGGCTGTTGGAGTCCGCTTCTATACCAAATCAC CTTCAGCATAG
AA sequence Show only first row Show all	>Potri.002G242500.1 pacid=42777795 polypeptide=Potri.002G242500.1.p locus=Potri.002G242500 ID=Potri.002G242500.1.v4.1 annot-version=v4.1 MGGNGKVFTLAEVSAHNSPKDCWLVVEGRVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSSTARALMDEFYVGDIDTATIPTSVKYTPPKQPHYN QDKTPEFIIKLLQFLVPLIILAVAVGVRFYTKSPSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	0	1
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	1.41	0.9427
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	1.73	0.9533	OMT1.1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.017G059300 [exp]	1.73	0.9389	SHM4.2
AT1G06660		JASON	JASON, unknown protein		Potri.005G205700 [exp]	2.64	0.9246
AT1G18290			unknown protein		Potri.015G036800 [exp]	3.31	0.9147
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	3.87	0.9334
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.002G146400 [exp]	4.24	0.9235
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.001G072300 [exp]	4.24	0.9251
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	4.47	0.9191
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	4.89	0.9358	Pt-SAM1.1

Compare expression of checked genes

Potri.002G242500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.