Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL13.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13170 357 / 3e-127 Ribosomal protein L13 family protein (.1) AT5G48760 356 / 8e-127 Ribosomal protein L13 family protein (.1.2) AT3G24830 353 / 6e-126 Ribosomal protein L13 family protein (.1) AT3G07110 350 / 1e-124 Ribosomal protein L13 family protein (.1.2) AT1G78630 56 / 3e-09 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314500 [exp] 359 / 3e-128 AT5G48760 384 / 7e-138 Ribosomal protein L13 family protein (.1.2) Potri.017G054600 [exp] 355 / 1e-126 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.001G384600 [exp] 50 / 2e-07 AT1G78630 351 / 1e-123 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.011G106100 [exp] 49 / 3e-07 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011857 [exp] 362 / 3e-129 AT5G48760 394 / 8e-142 Ribosomal protein L13 family protein (.1.2) Lus10022793 [exp] 361 / 6e-129 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2) Lus10016679 [exp] 358 / 1e-127 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10007137 [exp] 355 / 2e-126 AT5G48760 384 / 6e-138 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 352 / 5e-125 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 352 / 5e-125 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10005553 [exp] 47 / 4e-06 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [poplar] [flax] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Potri.002G242600.1 pacid=42777323 polypeptide=Potri.002G242600.1.p locus=Potri.002G242600 ID=Potri.002G242600.1.v4.1 annot-version=v4.1 ATGGTGTCAGGATCAGGTGTCTGCGCGAAGGTGGTAGTGGTGGACGCGAGACACCACATGCTTGGGCGTTTGGCATCTATCATTGCTAAGGAGCTCTTGA ACGGCCAGAAAGTTGTGGTTGTTAGGTGCGAGGAGATATGTATGTCTGGTGGGCTTGTGAGACAGAAGATGAAGTACTTGAGGTTTCTCCGTAAGCGCAT GAACACCAAGCCTTCTCATGGTCCCATCCACTTCCGCGCTCCTGCTAAGATCTTCTGGCGCACCGTTCGTGGAATGATACCACACAAGACTAAGAAAGGG GAGGCAGCACTTGCAAGGTTGAAGGCTTATGAGGGAATCCCACCTCCTTATGACAAGAAGAAGAGGATGGTTATCCCTGATGCTCTTAAGGTGTTGAGGC TTCAGAAGGGTCACAAGTACTGCTTGTTGGGCAAACTGTCATCTGAGGTTGGATGGAACCACTATGACATCATCAGGGAGCTGGAGGAGAAGAGGAAGGA GAGGTCCCAGGTTAGATATGAAAGGAAGAAACAGCTCAACAAACTCAGGGCAAAGGCAGAGGTAACTGCAGAAGAAAAACTTGGTCCCCAAGTAGATATC CTTGCACCTGTTAAGTACTGA
AA sequence Show only first row Show all	>Potri.002G242600.1 pacid=42777323 polypeptide=Potri.002G242600.1.p locus=Potri.002G242600 ID=Potri.002G242600.1.v4.1 annot-version=v4.1 MVSGSGVCAKVVVVDARHHMLGRLASIIAKELLNGQKVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKKG EAALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQKGHKYCLLGKLSSEVGWNHYDIIRELEEKRKERSQVRYERKKQLNKLRAKAEVTAEEKLGPQVDI LAPVKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13170			Ribosomal protein L13 family p...		Potri.002G242600 [exp]	0	1	Pt-RPL13.3
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.013G013600 [exp]	1.00	0.9741	RPL18.11
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	2.44	0.9716
AT2G37190			Ribosomal protein L11 family p...		Potri.006G077200 [exp]	2.44	0.9711	RPL12.4
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	7.74	0.9653	RPL15.3
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Potri.016G124100 [exp]	7.93	0.9483
AT5G59850			Ribosomal protein S8 family pr...		Potri.003G114800 [exp]	7.93	0.9637	RPS15.1
AT5G28060			Ribosomal protein S24e family ...		Potri.010G087800 [exp]	8.24	0.9495
AT5G04800			Ribosomal S17 family protein (...		Potri.010G241200 [exp]	9.79	0.9639
AT3G02560			Ribosomal protein S7e family p...		Potri.004G099200 [exp]	10.00	0.9643
AT5G15610			Proteasome component (PCI) dom...		Potri.004G116700 [exp]	11.53	0.9490

Compare expression of checked genes

Potri.002G242600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.