Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48740 1110 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 379 / 2e-116 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G14440 362 / 6e-111 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 360 / 4e-110 Leucine-rich repeat protein kinase family protein (.1) AT2G28990 358 / 2e-109 Leucine-rich repeat protein kinase family protein (.1) AT2G19190 356 / 1e-108 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT1G49100 355 / 2e-108 Leucine-rich repeat protein kinase family protein (.1) AT2G04300 353 / 8e-108 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 348 / 7e-106 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 348 / 1e-105 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052800 [exp] 409 / 5e-128 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G132100 [exp] 408 / 9e-128 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 299 / 3e-87 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G084900 [exp] 291 / 2e-84 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.007G004700 [exp] 281 / 1e-80 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.004G059100 [exp] 273 / 2e-80 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 268 / 2e-78 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094200 [exp] 263 / 3e-78 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.011G164700 [exp] 263 / 4e-75 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025926 [exp] 1260 / 0 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 1128 / 0 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 900 / 0 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 393 / 1e-121 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 399 / 4e-121 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019907 [exp] 371 / 7e-114 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10025849 [exp] 339 / 3e-102 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10036935 [exp] 291 / 2e-84 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 286 / 2e-82 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019237 [exp] 285 / 5e-82 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G242700.1 pacid=42777438 polypeptide=Potri.002G242700.1.p locus=Potri.002G242700 ID=Potri.002G242700.1.v4.1 annot-version=v4.1 ATGTATTGTCCTGGTTCTACTGAGTGGTCCAGCTCTGGCTCTGGCTCTATGGCCTTCAAGTGCTTCTTGCTTGGCTTCGTTCTGTTGTGTAGCCTGTGGA CTGTTGGTTTCTGTAACCAAGATGACACAGGTTTCGGTTTCTTGAGCTTATCTTGTGGTGGAACTACGGGTTACGTTGATGCATCCAACATCTCCTGGGT CTCAGATGGTGCATACATTAGCTCAGGCAAAACAACAAGCATTGATTACATTGAGGGCACATCCTCCTCCAATTCCCCCCTGAGGTTTTTCCCAGATGAC AAAAGTCCGAAGTGTTATAAACTACCAGTGAAGAAGAACGTGTCATCCAGCATGGTTCTAGTTAGAGCTCGATTTGTGTACAAGAATTATGACAGACTTG GAAAACCTCCGGTCTTTTCTGTTTCTCTTGGCACTGCCATCACCAGTACTGTAAACCTCACTGGTAATGATCCATGGATAGAAGAGTTTGTCTGGCCAGT TAATTATAAAGATACACTTTCCTTTTGTTTACATTCTGTCCCACATGGTGGATCTCCTGTTATTTCATCACTTGAAGTACGACCACTTCCTCGAGGAGCT TACCATACTGGCATGAGGGATTTCCCAAATAAGTCTCTCAGGAAGGCTTACCGCATCAATAGTGGTTATAATGAGTCCTTGCGGTACCCTTTGGATCCTT ATGACCGTATCTGGGATGCTGATCAAAGCTACACGCCCTTTCATGTGTCATCTGGATTCAATTTTTTACTTGGCTTCAATTTGTCAAGTGTCATTGAGAG TCCTCCTCCTGCTGTTCTTCAGACTGCAAGAGTTCTTGCGCGAACAGATGTCTTAACTTATAACCTTCCTCTTGATGCACTCGGGGACTACTACATTATA CTCTACTTTGCCGGAATTGTTCCTGCCTCTCCATCTTTTGATGTCTTGGTTAATGGAGATGTAGTGCAGTCAAATTATCATGTCAAAATGTCAGAAGCCA GTGCTCTACACTTGACTCAAAAAGGAATCGAGAACTTGAATATCACAATGAAAAGCATCAGCTTCTATCCACAAATCAATGCTATTGAGGTGTATGAGAT TGTTGATATTCCATTAGAATCTTCCTCAACTACAGTGTCAGCACTTCAGGTCATTCAGCAGTCTACTGGCTTGGATCTCGGGTGGGAGGATGATCCGTGC TCGCCGACAATGTGGGAACATATTGGATGCGAAGGAAGCATAGTTACATCACTGGAGCTTTCAGACATAAATCTGAGGTCAATTAGTCCTACTTTTGGTG ACTTGTTGGATCTTAAAACACTGGATTTGCACAACACGTCACTTGCTGGAGAGATACAGAACTTAGGAAGCCTCCAGCATCTTGAGAAGCTGAACCTGAG CTTCAATCAGCTAACATCTTTTGGAACTGAATTGGAGAACTTGGTTAGCCTTCAAATTCTGGACCTGCAAAACAACAGCTTAGATGGAATAGTTCCTGAT GACCTGGGAGAGTTGGAGGACCTTCACCTATTGAACCTGGAAAACAATAAACTGCAAGGTACCCTCCCGCAATCTTTGAACAGAGAGAGTTTGGAAGTCA GGACATCCGGGAATCTGTGCCTTTCCTTCTCCACCTTGTCATGCAATGATGTTTCCTCCAATCCATCTATTGAGACTCCACAAGTTACTATCTTTACCAA GAAGAAGCCTGACAAAAATACTCACATGGCAATCATGCTTGGTGCCATTGGAGGAACCTTACTTGCTCTTATTGTGATTTCTCTTTCAGTATTATTGTAC ATGAGGAGAGAAAGAACTGAAATCACATATTCAGAAAGGGCAGTGGATATGCGAAATTGGAATGCTGCAAGAATCTTTTCCTACAAAGAAATAAAAGCAG CTACAAATAACTTTAAGGAGGTTATCGGCCGTGGCAGCTTCGGATCTGTTTATCTAGGAAAGCTATCAGATGGAAAACTGGTAGCAGTGAAAGTGCGATT CGATAAAAGTCAACTTGGAGCTGATTCTTTTATTAATGAGGTGTATCTTTTGTCACAAGTTCGTCATCAGAATCTTGTCTGTTTGGAAGGATTTTGCCAT GAATCAAAGCAGCAGATACTAGTGTATGAGTATCTGCCTGGTGGCTCGTTGGCTGATCAACTTTACGGACCAAACAGCCAAAAAGTTTCTTTAAGCTGGG TTCGTAGATTGAAAATTGCTGCCGATGCTGCAAAAGGATTGGACTATTTGCACAATGCAAGTGATCCACGAATCATACACCGGGATGTGAAGTGTAGCAA TATTTTGTTGGACAAGGAGATGAATGCCAAGGTCTGTGACTTCGGCCTTTCTAAGCAAGTTATGCAGGCAGATGCTACCCATGTGACCACTGTTGTCAAG GGCACGGCAGGCTATCTTGATCCCGAATATTATTCTACCCAACAGCTTACAGAGAAAAGCGACGTCTACAGCTTCGGTGTTGTTCTTCTAGAACTCATCT GCGGGCGAGAACCATTGCGTCGCTCTGGAACTCCAGATTCCTTCAATTTGGTGTTATGGGCGAAGCCCTACTTGCAGGCAGGAGCATTGGAAATAGTGGA TGAAAACTTAAAGGGAACTTTTGATGTGGAAAGCATGAGAAAGGCAGCTATAGTAGCTGTAAGGTCTGTAGAGAGAGATGCCTCGCAGAGGCCAACCATT GCAGAGGTATTGGCAGAGCTGAAAGAAGCCTACAGCATCCAGCTCTCCTTCCTTGCGTCTTTTGACATGTAA
AA sequence Show only first row Show all	>Potri.002G242700.1 pacid=42777438 polypeptide=Potri.002G242700.1.p locus=Potri.002G242700 ID=Potri.002G242700.1.v4.1 annot-version=v4.1 MYCPGSTEWSSSGSGSMAFKCFLLGFVLLCSLWTVGFCNQDDTGFGFLSLSCGGTTGYVDASNISWVSDGAYISSGKTTSIDYIEGTSSSNSPLRFFPDD KSPKCYKLPVKKNVSSSMVLVRARFVYKNYDRLGKPPVFSVSLGTAITSTVNLTGNDPWIEEFVWPVNYKDTLSFCLHSVPHGGSPVISSLEVRPLPRGA YHTGMRDFPNKSLRKAYRINSGYNESLRYPLDPYDRIWDADQSYTPFHVSSGFNFLLGFNLSSVIESPPPAVLQTARVLARTDVLTYNLPLDALGDYYII LYFAGIVPASPSFDVLVNGDVVQSNYHVKMSEASALHLTQKGIENLNITMKSISFYPQINAIEVYEIVDIPLESSSTTVSALQVIQQSTGLDLGWEDDPC SPTMWEHIGCEGSIVTSLELSDINLRSISPTFGDLLDLKTLDLHNTSLAGEIQNLGSLQHLEKLNLSFNQLTSFGTELENLVSLQILDLQNNSLDGIVPD DLGELEDLHLLNLENNKLQGTLPQSLNRESLEVRTSGNLCLSFSTLSCNDVSSNPSIETPQVTIFTKKKPDKNTHMAIMLGAIGGTLLALIVISLSVLLY MRRERTEITYSERAVDMRNWNAARIFSYKEIKAATNNFKEVIGRGSFGSVYLGKLSDGKLVAVKVRFDKSQLGADSFINEVYLLSQVRHQNLVCLEGFCH ESKQQILVYEYLPGGSLADQLYGPNSQKVSLSWVRRLKIAADAAKGLDYLHNASDPRIIHRDVKCSNILLDKEMNAKVCDFGLSKQVMQADATHVTTVVK GTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLRRSGTPDSFNLVLWAKPYLQAGALEIVDENLKGTFDVESMRKAAIVAVRSVERDASQRPTI AEVLAELKEAYSIQLSFLASFDM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48740			Leucine-rich repeat protein ki...		Potri.002G242700 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	1.41	0.9275
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.012G077800 [exp]	1.41	0.8978
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	2.44	0.8869
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	4.69	0.8746
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	5.29	0.8935
AT1G61667			Protein of unknown function, D...		Potri.011G032600 [exp]	6.00	0.8767
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	10.24	0.8845
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	10.67	0.8308
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	11.91	0.8271
AT3G08490			unknown protein		Potri.001G267200 [exp]	12.32	0.8632

Compare expression of checked genes

Potri.002G242700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.