Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13150 375 / 9e-130 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025925 [exp] 427 / 1e-149 AT4G13150 396 / 8e-138 unknown protein Lus10038173 [exp] 317 / 9e-109 AT4G13150 332 / 2e-115 unknown protein Lus10038175 [exp] 266 / 8e-88 AT4G13150 203 / 8e-64 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.002G242800.1 pacid=42777413 polypeptide=Potri.002G242800.1.p locus=Potri.002G242800 ID=Potri.002G242800.1.v4.1 annot-version=v4.1 ATGGCATTGATGTCAGTTTTAACACACGGGTCATCCTTAAACCTCCCTAAACCTGCTCCCAGATGCTTCAGTCCAAGTCGACGAGCACGAGCTCTAGTAC TGAACCACTCAAGGTCTGGTCACAAAGTTTTCTTTTGTAACAGGGGACCCTCAGCTTTCAGGATTAGAAGATTTCAGAGTAAAGATTCGAGAAATTATGA GGCTGCAAAAGATACTCAAGGTGACCTGGATTTACCTTCTGATGAGGCAGTTGTAAATAAAAAAAATGAACCAACTTCTACGGGAAGTTCATTTCTCTTG ATATTAGCAATCGTGTTGGGTGTCGCTGCAATTTTTACAATCATGTCAGTTGGCCTTAAGCAGTCTAGTACAGGATCTTTCTTTGGAGTTCAATTTCTGG CTGAAGGTTCCCCCTCACCAGTCATGGCTGCATCCCCTATTGGTTTTACTTTCAAAGCTTTTGGATACAGAATCATTCTTCCTGAATATGCTCCAGGATG CGTTTACTTTTGGTTGCTCATGGCTGCTGGTTGTGGACTTTTCATCAGTGAAGAGGCTTTAAATATATGGGTAGGCATAACTTTGTCGCGGATGCTGTCT TTGGATGGCACATGGCAATCATTTGCTGGTTCTTTCTCCAGAAATGCTCCATATATTATATCAACGGTTCTATGGGTATACTGGGGGGTATGCATCAGTG ATATGATACCGTTCTACCTGGGGAAGCTTTTCAAGCAAAGTGGTGCATCTGATGATGTTTGTTCAAAGTTGGGCATCAGTGAAGAGAAGGTGTTGAGCAT TACAAGTGTTGTGCAAAAATATGGCAATCTCGTGGGTGTTGTTGAGCGGTTTTCTCTTGGAGCACGAAATCCCACAGCTTTCTTAGCGGGGACAATGGGT GTATCTCCAGAGTGCTTTTTTACTGGAGTTTGTTGTGGTGGCTTGATCACTCTTCCACTTCAGCTCGGGATTGGATTTCTATTGAGGGAGCGCCCCATGT TTGCCCTTGCCACGGTTGCAACAGTTGTGGGAGTCTGGACTGTGTTTCCATATGTTACGGCTGCTTCAACAGCATTATTCTTTTACCTGAAACGTCGCTA TTCTACATAG
AA sequence Show only first row Show all	>Potri.002G242800.1 pacid=42777413 polypeptide=Potri.002G242800.1.p locus=Potri.002G242800 ID=Potri.002G242800.1.v4.1 annot-version=v4.1 MALMSVLTHGSSLNLPKPAPRCFSPSRRARALVLNHSRSGHKVFFCNRGPSAFRIRRFQSKDSRNYEAAKDTQGDLDLPSDEAVVNKKNEPTSTGSSFLL ILAIVLGVAAIFTIMSVGLKQSSTGSFFGVQFLAEGSPSPVMAASPIGFTFKAFGYRIILPEYAPGCVYFWLLMAAGCGLFISEEALNIWVGITLSRMLS LDGTWQSFAGSFSRNAPYIISTVLWVYWGVCISDMIPFYLGKLFKQSGASDDVCSKLGISEEKVLSITSVVQKYGNLVGVVERFSLGARNPTAFLAGTMG VSPECFFTGVCCGGLITLPLQLGIGFLLRERPMFALATVATVVGVWTVFPYVTAASTALFFYLKRRYST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13150			unknown protein		Potri.002G242800 [exp]	0	1
AT1G51110			Plastid-lipid associated prote...		Potri.001G011700 [exp]	1.00	0.9848
AT4G19985			Acyl-CoA N-acyltransferases (N...		Potri.019G065400 [exp]	1.41	0.9799
					Potri.011G080900 [exp]	3.87	0.9732
AT2G05310			unknown protein		Potri.014G167300 [exp]	4.89	0.9628
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	5.29	0.9668
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	6.24	0.9622
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	7.07	0.9686
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	8.71	0.9705
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	10.19	0.9667
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	13.07	0.9595

Compare expression of checked genes

Potri.002G242800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.