Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) AT4G13160 93 / 9e-21 Protein of unknown function, DUF593 (.1) AT1G04890 84 / 7e-17 Protein of unknown function, DUF593 (.1) AT1G70750 71 / 2e-12 Protein of unknown function, DUF593 (.1) AT5G16720 69 / 9e-12 Protein of unknown function, DUF593 (.1) AT1G74830 57 / 2e-08 Protein of unknown function, DUF593 (.1) AT5G06560 56 / 1e-07 Protein of unknown function, DUF593 (.1) AT3G54740 54 / 2e-07 Protein of unknown function, DUF593 (.1.2) AT1G18990 53 / 6e-07 Protein of unknown function, DUF593 (.1) AT5G57830 50 / 5e-06 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055100 [exp] 214 / 1e-59 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.004G087600 [exp] 61 / 2e-09 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 61 / 3e-09 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 60 / 4e-09 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 60 / 6e-09 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.002G042500 [exp] 57 / 3e-08 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 55 / 1e-07 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 54 / 2e-07 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 54 / 4e-07 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011854 [exp] 167 / 2e-44 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10007129 [exp] 168 / 6e-44 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 158 / 1e-40 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10022791 [exp] 147 / 1e-37 AT4G13630 200 / 2e-57 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 71 / 2e-12 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 62 / 1e-09 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 56 / 1e-07 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 54 / 2e-07 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 55 / 3e-07 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 54 / 5e-07 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.002G242900.5 pacid=42776848 polypeptide=Potri.002G242900.5.p locus=Potri.002G242900 ID=Potri.002G242900.5.v4.1 annot-version=v4.1 ATGGCTTTCAGGGCAGTTCATTCGTGGACCTTGGCTGATCTTATCTTTGCCTTTCGTGACCTTGCCATTGCTTATGTCCTGCTTTGTGGATCCGCTTATG CATTTCTTTTATCAAAATTCTTGAGTGCTTTTGGGTTTTATCTGCCATGTCCATGTACAGGCCTTTTTGGGTATCAAAATAACGATTTGTGTTTGCATAA ACTGTTAATTGATTGGCCAAAAAGCAAAATCTATTATGTCCAAGCGCTGGTGAAGAGTAGGTTCCCTTTTGATTTGATTTGGTTTGCGGACCAATCAAGT GATTTGCATGTGGAGGGTGTTAGAGATAAGAAACGGGAAAATGGGGTGATTGAATTGAAGGGAGAAGGGTGCTCCACTTCCCTTTCAGGTCCAAGATTTT CGAGTTGTGTTGGTGGAGAAAGTGGATATGATGCTAAGGAGAAGAAAGTTACGAACCAAAAGTACAAGCCTGGGATCCGGAGGCGCAGGAGAGCTACTAC TGGATATGGTAGATTCCTTTCCGCTTTGTCTGCAAATAGCACACGCTCAATTGGTCTAGCTGCTCCTCTCTCTAGTCATGATAGCGGCGGTGAAATGGGA AGTCAAATCAGTGGAAACTTGGGTCCTGCAAGTGGAACTGAAGATGGTCTTCTGGGTGATGGACATGGTCCAATTGTTATTGATCATGGTAAAAGAGTTC ATAGTAGTTTTGAGTTGAATGGGTTGTATGACAAGGGTAAAGGCATCAGAAACGACCCATCATTTGTTAAAAACATGGCATGTAATGCTGAAGATGTATC GGACAGTGTTGGAAATGATGCGATCAAAATGTTGGAACAATCACTTGAAGAAGAGAAAACTGCGCTAGCTGCTCTTTACCAAGAGTTGGAGAAAGAGAGG GCTGCTGCAGCTAGTGCAGCTGATGAGGCGATGGCCATGATCATGAGGTTGCAAGAGGATAAGGCATCAATAGAAATGGAAACGAGGCAGTATCAGAGGA TGATAGAAGAAAAGTTTGCTTATGATGACGAAGAGATGGATATTCTGAAAGAGATCCTTGTTCGGAAGGAGCTGGAGAATCATTATCTAGTGAAGAAACT CGAAGCTTATCAGTTAATGAACATTTCAGGAAAAGAGCAGCTGGATGAAAGCAATCAGATGAACAGTACTGGAAAAAGGCCTTCACTTTCATTTGATTCC GATGAGAATCTATCCCTGCTGCCAGAGCAGATGGTGAAGAGTAAAACCATTTTTCAGAAGGAAGTGAAAACAAACGCAACTTGTTCATCAAATGATGAAG AAAGTCATACTCTTGCTTTTGGGAAGGAAATGATGCCAGAGTGTAAGGAGTCAGCTTCTGATTCATCTACTTCAGAAGGGGTGCTGCAGAAAACTGTTTG CGTAGCAGGGAAAGAAAAAACACAAAGATATGTTAGCGTGGTTTCCCAAACTTGCGGAGGCATGGAAGAGGAGATGGGAAAAGACAGAAATCATTTGAAT CAAGTAGGAAGCTGTATGCATAGTCCCATGCTTGACACTGAATTGACTGTTTATGATGTTCATGTCGTTGATGATGAAACAACAGTTTGGAAGGAGGGTG GTGGAAAAGAAAGTGGACCATTAAGTAGTGCTCCTTCAGATTTTGAGGTTTGGACCACTAGTGAACTGAGTGATTGTCCAAGAACAAGCATGACAGAAAT TGAGCCTAATGGTCGTGGAAGCCATTTGGATACCACTAGCAGTTCACCAGGGTTGGGCGATTCACAGTGCAAAACCTTGGATATTGACTCACAGCGGAGT TCTTCATCGGCAGTCAATAGTGAAAGGTTTAAAATTGACTCCGAAGTTGAATGGCTTAGAGAAAGGCTACGAACAGTGCAAGAGAAAAAGGATAAATTGA CTTTCCCTGCAGAGCACAATGAGAGGGTCAATGCACAACTGAAACTTGTGGAGGAGATAATAAGCCAGCTTCGAGAAACTTATCAGCTGAGAGAGCCAGT GCGGCAGGCTTCTTTACCCCCTTTATCTTCTAAGGTGAGCTTGAAAAAACGGAGTTGCAGAAGTGTGTCGTCGGAGGCCTTTGAAAGTGCCTGA
AA sequence Show only first row Show all	>Potri.002G242900.5 pacid=42776848 polypeptide=Potri.002G242900.5.p locus=Potri.002G242900 ID=Potri.002G242900.5.v4.1 annot-version=v4.1 MAFRAVHSWTLADLIFAFRDLAIAYVLLCGSAYAFLLSKFLSAFGFYLPCPCTGLFGYQNNDLCLHKLLIDWPKSKIYYVQALVKSRFPFDLIWFADQSS DLHVEGVRDKKRENGVIELKGEGCSTSLSGPRFSSCVGGESGYDAKEKKVTNQKYKPGIRRRRRATTGYGRFLSALSANSTRSIGLAAPLSSHDSGGEMG SQISGNLGPASGTEDGLLGDGHGPIVIDHGKRVHSSFELNGLYDKGKGIRNDPSFVKNMACNAEDVSDSVGNDAIKMLEQSLEEEKTALAALYQELEKER AAAASAADEAMAMIMRLQEDKASIEMETRQYQRMIEEKFAYDDEEMDILKEILVRKELENHYLVKKLEAYQLMNISGKEQLDESNQMNSTGKRPSLSFDS DENLSLLPEQMVKSKTIFQKEVKTNATCSSNDEESHTLAFGKEMMPECKESASDSSTSEGVLQKTVCVAGKEKTQRYVSVVSQTCGGMEEEMGKDRNHLN QVGSCMHSPMLDTELTVYDVHVVDDETTVWKEGGGKESGPLSSAPSDFEVWTTSELSDCPRTSMTEIEPNGRGSHLDTTSSSPGLGDSQCKTLDIDSQRS SSSAVNSERFKIDSEVEWLRERLRTVQEKKDKLTFPAEHNERVNAQLKLVEEIISQLRETYQLREPVRQASLPPLSSKVSLKKRSCRSVSSEAFESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13630			Protein of unknown function, D...		Potri.002G242900 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.010G237100 [exp]	1.00	0.9058
AT1G29760			Putative adipose-regulatory pr...		Potri.011G072200 [exp]	2.00	0.8782
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.006G214800 [exp]	3.46	0.8586
AT1G55170			unknown protein		Potri.003G037900 [exp]	3.74	0.8336
AT4G24290			MAC/Perforin domain-containing...		Potri.003G006500 [exp]	5.00	0.8446
					Potri.001G077400 [exp]	7.48	0.8336
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Potri.009G111200 [exp]	8.71	0.7722
AT5G66810			unknown protein		Potri.005G137100 [exp]	9.48	0.8015
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.003G122300 [exp]	13.22	0.7762
AT5G04670			Enhancer of polycomb-like tran...		Potri.008G024300 [exp]	13.74	0.8335

Compare expression of checked genes

Potri.002G242900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.