Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24840 637 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21520 454 / 4e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 444 / 2e-149 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 444 / 8e-149 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 430 / 3e-144 ATSFH3 SEC14-like 3 (.1.2.3) AT4G36490 420 / 3e-140 ATSFH12 SEC14-like 12 (.1) AT1G55690 422 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G19650 419 / 6e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 408 / 2e-135 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 403 / 9e-133 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G168300 [exp] 475 / 6e-161 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.001G471300 [exp] 473 / 5e-160 AT1G55690 714 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.004G157700 [exp] 462 / 1e-155 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 456 / 2e-153 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 450 / 4e-151 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 444 / 2e-148 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G119700 [exp] 439 / 4e-147 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 434 / 2e-145 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.009G119400 [exp] 418 / 9e-139 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022790 [exp] 755 / 0 AT3G24840 650 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10011853 [exp] 699 / 0 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 670 / 0 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025924 [exp] 635 / 0 AT3G24840 520 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10008360 [exp] 438 / 1e-144 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10042302 [exp] 433 / 9e-144 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 433 / 2e-143 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 424 / 9e-141 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10040431 [exp] 422 / 1e-139 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10041779 [exp] 412 / 3e-137 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G243000.3 pacid=42777175 polypeptide=Potri.002G243000.3.p locus=Potri.002G243000 ID=Potri.002G243000.3.v4.1 annot-version=v4.1 ATGACGTTTCATCGAAGATCCAGCAGATCCGATAACAGAATAGTAAAGGAAATGACAGGGGAGGTGATTTTGAGGAGTGAAGAAAGTGACAAGGGGAAAG GAATGGATCTGGAGACGTCAGAGGACGAGAAGCAGCAGCAGCATCAGCGAAGGAAGAAGGTTAGATCTTTGAGGAAAAAGGCAATGAGTGCATCCACTAA GCTCACGCATACGCTAAGGAAGCGTGGGAAGCGTGTTGCTGATTGCAGGTATGCTGCGATTACTATCAATGATGTTAGAGATGCAAAGGAGGAAGAGGCT GTCAATGCATTTCGCCTCGTGTTGATCTCCAAAGACCTTCTTCCCCCTCGACATGATGATTACCACACTTTATTGAGGTTTTTGAAAGCAAGGAAATTTG ACCTTGATAAAACGGTGCTGATGTGGTCAGAAATGCTCAACTGGAGAAGAGAGTACGGGGTAGATTCGATAATACAGGATTTTGTATACGATGAATATGA AGAGGTTCAAAGTTATTATCCTCATGGTTACCATGGTGTAGACAAAGCGGGTCGACCTGTTTATATTGAAAGAACTGGCAAAATTGAACCAAGCAAGTTA ATGAGAGTTACCACAGTGGAGAGATTTTTGAAATATCATGTCCAGGGGTTTGAGAAGGCTTTCACTGAGAAATTCCCTGCATGTTCTATAGCAGCTAAGA GGCACATAGATTCTACAATAACAATTTTGGACGTCCATGGGCTGAACTGGATGAGCTTCGGCAAGGTTGCTCATGATCTAGTTATGCACATGCAAAAAAT TGATGGTGACAACTATCCTGAGACACTACATCAGATGTTCATTGTTAACGCTGGTAGTGGATTCAAACTGCTATGGAACACAGCAAAAGGCTTTCTTGAC CCGAAGACTACTGCGAAGATAAATGTTCTAGGCAACAAGTTCCAAAATAAGTTGTTGGAAGTTATAGACTCAAGCCAACTTCCTGAATTTCTTGGTGGAA CCTGCTCATGCCCAAATGAAGGTGGTTGCCTAAGATCCGACAATGGCCCGTGGAAGGATCCAGAAATAATGAAATTGGTACATGCTGGAGAAGCAATATA TTTGAGAAAAATGAATAGTTCTTTTGATGAAGACGATTTTGAAATCAAGTTGTTTGCTTCCAAGGTTTCAAGAAGTGAAATCTGCTCTGCTGATTCATGC TCGGACACGAGGCCAAATGCCTCTGACTTCATTCAACCATTGCCACTTTCAGATGAAGGAAGGATGGGTGATTCTGCTTCTGTCCACAGCTTGGTTGAAA ACAATGCTACCAGAGTCAAAGATACTAGTTCAATGAGTAGCAGGAAGGCTTCAAGCATTGCATTAATTGTTTATTTGTGCATTCAAAGACTAGCCGGACA ACATTTCTCAGTACTTAAAGATGATTCAGCTAATGATGTTACTCCAAGAATGCTGCTGAAGAAATTTATTCCTCAAACAGCAAGCCTTTTGGTGCAGTTT GTGCTCAACTTGTTACTATGGATGTATCTTAAACTCCCAGGGACAGGGAGAGCTCTTTCATCACAAAGAGACAGTCAACTGCAAAACCAGCGTGACTCAC TATTGGAAGATTCAAGTTCTCAAGTGCAAGGTGTTTCGCAGGAAATAAAAGAAGAACCGCTTCATCCGTGCTGGCAGAGACTGCAAAATTTAGAAACAAT GGTTAATGAGCTAGGTAGCAAGCCAACCAGAATTCCTCCTGAGAAAGAGGACATGCTTCTTGAGTCATTGAGTCGCATTAAATGTATAGAGCATGATCTA CAGAAGACAAAGAAAGCACTACTCGCAACTGCATCGAGACAAGTGGAGCTCGCAGAATCACTGGAGAGTCTAAAGGGAAACAGCTTAGCTGGAGCAGCAA ACTCTTGTTGGCCAAGAAATTGCAAGTACTTTCCTCCAGAAAGATAG
AA sequence Show only first row Show all	>Potri.002G243000.3 pacid=42777175 polypeptide=Potri.002G243000.3.p locus=Potri.002G243000 ID=Potri.002G243000.3.v4.1 annot-version=v4.1 MTFHRRSSRSDNRIVKEMTGEVILRSEESDKGKGMDLETSEDEKQQQHQRRKKVRSLRKKAMSASTKLTHTLRKRGKRVADCRYAAITINDVRDAKEEEA VNAFRLVLISKDLLPPRHDDYHTLLRFLKARKFDLDKTVLMWSEMLNWRREYGVDSIIQDFVYDEYEEVQSYYPHGYHGVDKAGRPVYIERTGKIEPSKL MRVTTVERFLKYHVQGFEKAFTEKFPACSIAAKRHIDSTITILDVHGLNWMSFGKVAHDLVMHMQKIDGDNYPETLHQMFIVNAGSGFKLLWNTAKGFLD PKTTAKINVLGNKFQNKLLEVIDSSQLPEFLGGTCSCPNEGGCLRSDNGPWKDPEIMKLVHAGEAIYLRKMNSSFDEDDFEIKLFASKVSRSEICSADSC SDTRPNASDFIQPLPLSDEGRMGDSASVHSLVENNATRVKDTSSMSSRKASSIALIVYLCIQRLAGQHFSVLKDDSANDVTPRMLLKKFIPQTASLLVQF VLNLLLWMYLKLPGTGRALSSQRDSQLQNQRDSLLEDSSSQVQGVSQEIKEEPLHPCWQRLQNLETMVNELGSKPTRIPPEKEDMLLESLSRIKCIEHDL QKTKKALLATASRQVELAESLESLKGNSLAGAANSCWPRNCKYFPPER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24840			Sec14p-like phosphatidylinosit...		Potri.002G243000 [exp]	0	1
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	1.41	0.9612
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	4.47	0.9396
AT5G10840			Endomembrane protein 70 protei...		Potri.018G018400 [exp]	5.47	0.9422
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	5.65	0.9474
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	6.24	0.9485
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	6.48	0.9492
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	8.77	0.9366
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	9.48	0.9460
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	11.53	0.9405
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	11.61	0.9399

Compare expression of checked genes

Potri.002G243000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.