Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24860 167 / 8e-50 Trihelix Homeodomain-like superfamily protein (.1) AT2G44730 92 / 3e-21 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G14180 71 / 1e-13 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G10030 70 / 2e-13 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G58630 65 / 8e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 64 / 2e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24490 52 / 2e-07 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT4G17060 48 / 4e-06 FIP2 FRIGIDA interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139500 [exp] 106 / 2e-26 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 105 / 7e-26 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 96 / 3e-22 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G083800 [exp] 92 / 6e-21 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.T126206 [exp] 65 / 1e-11 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 63 / 4e-11 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G026000 [exp] 62 / 8e-11 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 59 / 1e-09 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 58 / 2e-09 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011851 [exp] 169 / 8e-51 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10022789 [exp] 164 / 9e-49 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10000963 [exp] 98 / 4e-23 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 98 / 5e-23 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10013350 [exp] 89 / 2e-22 AT3G24860 70 / 1e-15 Homeodomain-like superfamily protein (.1) Lus10011020 [exp] 89 / 8e-20 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10004091 [exp] 75 / 2e-16 AT3G24860 77 / 3e-17 Homeodomain-like superfamily protein (.1) Lus10025404 [exp] 64 / 1e-11 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 62 / 1e-11 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 56 / 1e-08 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G243300.1 pacid=42777827 polypeptide=Potri.002G243300.1.p locus=Potri.002G243300 ID=Potri.002G243300.1.v4.1 annot-version=v4.1 ATGTCCACACCTTCCCCATCTCCTTCACCACCACCACCACACTCACCACCGACAAACCCCACTCCACTCTCTTCCAAGAAAACCCAGCCTCTCCCCTGGA CCCACCAAGAAACCATCCATCTAATCCAAGCCTACCAAGAAAAGTGGTACTCCTTAAAACGCGGTCAGCTCAAGGCTAGCCAGTGGGAAGAAGTAGCCGT AACTGTGGCTGCCCGCTGCGGCTATGACTACAACCACCCTTCGAAATCCGCTGTCCAATGCCGCCACAAGATGGAGAAGCTCCGCAGAAGGTACCGAGAT GAGAAACGAGTCATGGCTCTTGGTGGCACTTGTTATTGGCAGTACTTTGATCTCATGGACTCCTTGGAACGCGGGCCTTTGCCCATTTCGGCGCAGCCGC TAGCTCGAGTACCCTGCCAGGAAAATTATCATACTAGGAACAGAAACAATGGCGTTCTTGGCGAATATGATGATGATAAAGGTGAAGATGAGGATGATGA TGATGATGAAGATTATGGGTATAGAAGCAAGTTGAGGAGCAGAAGCATTAACTATATACTCCGAAAGCCTAGTATTGTTAATAGGTATGCGGGTGGTGGT CCTTCTGGGGTTTCGCGGGAGGCGGAAAAGAAGAGGAAGAGAGAGGAAGTTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAAGGGGTGGAAATGG GGTTGGCGGGGCAAATAAAGGCGTTTTCGGAGAGGATGGTGAAGTTGGAGAGGAAGAAGTTGGAGGTGATGAAAGAAACAGAGAGGTCGAGAATGGAGAT GGAGAATAAGAAGCTCGAGATGATTTTAGATTCTCATAGTAAGATTGTTCATATGATTGGTGAAGCTTTTGGCTTGTGA
AA sequence Show only first row Show all	>Potri.002G243300.1 pacid=42777827 polypeptide=Potri.002G243300.1.p locus=Potri.002G243300 ID=Potri.002G243300.1.v4.1 annot-version=v4.1 MSTPSPSPSPPPPHSPPTNPTPLSSKKTQPLPWTHQETIHLIQAYQEKWYSLKRGQLKASQWEEVAVTVAARCGYDYNHPSKSAVQCRHKMEKLRRRYRD EKRVMALGGTCYWQYFDLMDSLERGPLPISAQPLARVPCQENYHTRNRNNGVLGEYDDDKGEDEDDDDDEDYGYRSKLRSRSINYILRKPSIVNRYAGGG PSGVSREAEKKRKREEVEEEEEEEEEEGEGVEMGLAGQIKAFSERMVKLERKKLEVMKETERSRMEMENKKLEMILDSHSKIVHMIGEAFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Potri.002G243300 [exp]	0	1
AT4G10925			Nuclear transport factor 2 (NT...		Potri.001G089600 [exp]	4.24	0.7442
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.011G056300 [exp]	6.48	0.6774
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.005G156100 [exp]	10.09	0.7442
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.005G192900 [exp]	19.89	0.6804	GBF4.2
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.012G103000 [exp]	27.34	0.5954
AT2G31600			unknown protein		Potri.007G126300 [exp]	28.91	0.6514
AT5G44150			unknown protein		Potri.017G017200 [exp]	45.98	0.6166
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G289900 [exp]	51.94	0.6239
					Potri.002G133566 [exp]	55.27	0.6774
AT5G58930			Protein of unknown function (D...		Potri.009G042200 [exp]	60.59	0.6412

Compare expression of checked genes

Potri.002G243300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.