Plant FIBer expression Database

Potri.002G243350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24870 189 / 8e-50 Helicase/SANT-associated, DNA binding protein (.1.2)
AT3G24880 188 / 3e-49 Helicase/SANT-associated, DNA binding protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G189900
[exp]
602 / 0 AT3G24870 1237 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011850
[exp]
139 / 2e-33 AT3G24870 1216 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
Lus10022788
[exp]
106 / 4e-23 AT3G24870 1202 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.002G243350.1 pacid=42777288 polypeptide=Potri.002G243350.1.p locus=Potri.002G243350 ID=Potri.002G243350.1.v4.1 annot-version=v4.1
ATGCCAAACCAAGGTGCTGTTGCATCAACGCTTCCCACTTCTGGTGCAATCTCTTCTCTGCAAGGATCTTCTGGCGTGGTTCTTGGCAATAACTCATCAT
CACCATCTGGTCCCCTCAATGCACCTCATAGAGATGGTAGATACAATGTTCCAAGGACATCTTTACCAGTTGACGAGCATCAAAGAATGCAACCCTATCA
AATGTTACCTAGTAGAAACTTGCAGCAGTCTAACATGTCGGTTTCTGGGGCTGTCTCTGGAGCTGATCGTGGTGTTCGCATGTTATCGAGTGGAAATGGT
ATGGGCATGATGCCAGGGATGAACAGAAGCATGCCACTGCCACGGTCAGGATTTCAAGGAACAGCCTCTTCATCAATGCTGAATTCTGGAAGTATGCTTT
CTAACAATGTGGTTGGGATGTCAAGCCCTGTGAATATGCACACTGGTTCTGGTCAAGGGAACTTGATGAGACCTCGCGAGGCTTTGCATATGTTGAGGCT
TGGCCATAATCATGAGCATCAAAGACAAATGATGGTACCAGAGCTTCAGATGCAGCCAACACAAGGGAACAACCAAGGAATTTCTGCTTTCAACGGGGTG
CCTACTGCTTTTGCTAATCAGACAACTACTTCACCTGTGCAGACATATCCAGGCCATCCCCAGCAGCAGCATCAAATGCCTGCACAACAGTCCAATATGC
TTAGCAATCCTCATCATCCTAATCTCCGTGGCCCCAATCAGGCTACAGGTTCACAGCATCCAGCATATGCTATGCACCTGCCTAAAGGAAGGCAAATGCA
GCAGCGGCTTCTCCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCACTTTTCTGCATCTAGTGCTTTGATGCCCCATGTCCAACATCAATCCCAACTTCCC
ATATCATCGTCTATGCAAAATAGTTCTCAAATCTCACCACCATCTGCATCGCAGCCGGTGTCACTACCTGCTATAACTCCCCCTTCCCCAATGACTCCCA
TTTCAATGCAGCAGCAACAGCAGCAGAAACACAACTTGCCACATCATGCGGTCAGTCGGAGCCCCCAAAGTGGTTCCAGTGGGTTGACCAATCAGATGGG
AAAGCAGCGACAACGGCAACCACAGCAGTTTCAACAATCTGGCAGACATCACCCTCAACAACGACAACACTCACAGTCTCCACAGCAGGCTAAACTTTTG
AAGGGAATGGGGAGAGGGAACATGGTGGTGCACCAGAACCTTCCCAATGATCACTCTCCTTTGAATGGCCTTTCTGTGCCTCCAGGAAACCATGGTGTAG
AGAAAGGAGAGCAAATCATGCACTTGATGCAGGGTCAAGGCTTGTATTCTGGGACTGGGTTGAGTCCAATTCATACATCTAAACCATTGGGTCCTTCACA
ATCTCCAAACCATTCTCAGCCACAGCAAAAGCTATATTCGGGCCCTACAACCCCTTCATCAAAGCCACTCCAGCAAATGCCTTCTCATTTGGAAAGTAGT
ACTCAAGGCCAGGTCCAACCAGTACCCTCTGGTCAAACACTAACAGCTACTCACCAGAACACTCCAGTTATGGTTCCCAGTCATCAGCATCTTCAACAAC
ATCCACAGCCACATCAGAAGCAGGTTAGTCAACCTCAACCAACTGTTCAGAGAATGCTTCAACAGAGTCGTCTGTTGAATTCTGATCTGCCAACAAAGCC
TCAAACTGATCAGGGCCATGCTGATCAGCAAACTTCAAACAACATCTCCCAGACAGGAACAAGTACATCCACAGGGATGCCTTTGGCCTGTAATGATACA
TCTAATGTGGCACCAGTTGTTTCTTCTGTTTCTGAGATGCAGTGGAAATCATCAGAACCATCCTTGCTTGATTCTGGCATGGCAGATACAGCTTCTAAGG
TAGGTCCTATTGGTAGCCCCCCCCTTACGAGTGCAGCTGGGAGTGAGCAAGTGGTGCCTGTCAGCCAAGGTTCAGTCCACAGGCAGTTATCAGGAGGCTT
GCCCCTGCATTGCCATAATGGTGGGACACGGTGGCAGCACCAACAACCACATCAATCAACAGCATCGCCTTCCCCATGCCAGCAACTTTTGCAGTCACAA
GAGCCACAACTACAGCAAGAACGACAACAATCACCTCAACAGCTGCCACCACAGCAGCCGACTCAGAAGCAGACACAGCATCTTCAATCAGGACAAGGCA
ATTTATACATCACGCCAAGCAATTCTGGTCTGGAATGA
AA sequence
>Potri.002G243350.1 pacid=42777288 polypeptide=Potri.002G243350.1.p locus=Potri.002G243350 ID=Potri.002G243350.1.v4.1 annot-version=v4.1
MPNQGAVASTLPTSGAISSLQGSSGVVLGNNSSSPSGPLNAPHRDGRYNVPRTSLPVDEHQRMQPYQMLPSRNLQQSNMSVSGAVSGADRGVRMLSSGNG
MGMMPGMNRSMPLPRSGFQGTASSSMLNSGSMLSNNVVGMSSPVNMHTGSGQGNLMRPREALHMLRLGHNHEHQRQMMVPELQMQPTQGNNQGISAFNGV
PTAFANQTTTSPVQTYPGHPQQQHQMPAQQSNMLSNPHHPNLRGPNQATGSQHPAYAMHLPKGRQMQQRLLQQQQQQQQQQHFSASSALMPHVQHQSQLP
ISSSMQNSSQISPPSASQPVSLPAITPPSPMTPISMQQQQQQKHNLPHHAVSRSPQSGSSGLTNQMGKQRQRQPQQFQQSGRHHPQQRQHSQSPQQAKLL
KGMGRGNMVVHQNLPNDHSPLNGLSVPPGNHGVEKGEQIMHLMQGQGLYSGTGLSPIHTSKPLGPSQSPNHSQPQQKLYSGPTTPSSKPLQQMPSHLESS
TQGQVQPVPSGQTLTATHQNTPVMVPSHQHLQQHPQPHQKQVSQPQPTVQRMLQQSRLLNSDLPTKPQTDQGHADQQTSNNISQTGTSTSTGMPLACNDT
SNVAPVVSSVSEMQWKSSEPSLLDSGMADTASKVGPIGSPPLTSAAGSEQVVPVSQGSVHRQLSGGLPLHCHNGGTRWQHQQPHQSTASPSPCQQLLQSQ
EPQLQQERQQSPQQLPPQQPTQKQTQHLQSGQGNLYITPSNSGLE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24870 Helicase/SANT-associated, DNA ... Potri.002G243350
[exp]
0 1
AT3G32940 RNA-binding KH domain-containi... Potri.003G216800
[exp]
3.00 0.8298
AT2G30530 unknown protein Potri.019G132300
[exp]
14.69 0.7772
AT2G41870 Remorin family protein (.1) Potri.014G058900
[exp]
25.51 0.7784
AT5G06160 ATO ATROPOS, splicing factor-relat... Potri.015G017200
[exp]
36.18 0.7591
AT4G26750 EXT-like extensin-like, hydroxyproline-... Potri.011G082000
[exp]
59.24 0.7300
AT5G57910 unknown protein Potri.018G105300
[exp]
75.49 0.6681
Potri.019G036280
[exp]
96.99 0.6962
AT5G11550 ARM repeat superfamily protein... Potri.006G240400
[exp]
99.19 0.6747
AT1G28280 VQ motif-containing protein (.... Potri.004G044800
[exp]
122.10 0.6805
AT5G12220 las1-like family protein (.1.2... Potri.001G273600
[exp]
144.67 0.6557

Potri.002G243350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.