Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24870 1017 / 0 Helicase/SANT-associated, DNA binding protein (.1.2) AT3G24880 1007 / 0 Helicase/SANT-associated, DNA binding protein (.1) AT3G12810 56 / 2e-07 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189900 [exp] 1970 / 0 AT3G24870 1237 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.001G207700 [exp] 59 / 2e-08 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 58 / 4e-08 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011850 [exp] 1170 / 0 AT3G24870 1216 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Lus10022788 [exp] 1167 / 0 AT3G24870 1202 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Lus10007174 [exp] 57 / 6e-08 AT3G12810 281 / 2e-85 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10002974 [exp] 57 / 2e-07 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07529 [poplar] [flax] HSA HSA CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G243400.18 pacid=42778360 polypeptide=Potri.002G243400.18.p locus=Potri.002G243400 ID=Potri.002G243400.18.v4.1 annot-version=v4.1 ATGCATGGATGTGGTTCAGGATATGCTCTCCTAGTAAATGCTGAGGTTGATTCCATGGGTGGGGTTGTTGATGGTGGAGTTGGTATTGCTACCAAAACCT CTCCGCGGCGAGCAGCAATTGAGAAGGCCCAGGTGGAACTTAGACAAGAGTATGATGTTCGTGAGGAACGGAGAAGGGAGCTAGAATTTCTTGAGAAAGG CGGCAATCCTTTGGATTTTAAATTTGTAAATGCAACTTCGGTCAGTGTCCAGTCTACTTCACTCACAGATCATCACGTTGAACAGTTTGTTACTAGTGAA GCAAAAGGCAGTTTTCCACTGACTGCATCACCTCATGGGGATTCTGTAGAAAGTAGTGGCAGACCAGGGGCTACTCCAGTTTGTGAGCCCAATAGTGCTG ACAATTTTGATGGTGAAAATGAGTTACTTGAAGTTGAAAGGAAACGTAAACATCCTAGTAGGAGGAATAATGTCACTCAATCAGAGCAGTCTTCACAGAT GGATGGAATTCACAATGCCAAGGAATCAGAAGATTCTGCTATTTTTCGGCCATATGCTCGAAGGAATAGGTCCAGACCAAATCGTGACGGCGCGCGATCA AGTTCAACTGATATTGTTCAGAGTTCAGTTGGCCATGGATCCTCTTTACCGGCTCGTGGGGAAGCAAGGGATGTGAAAGGGTTGGTAACTGAAACAGACG ATCATAAAGCCCAGATTATTACTTCCATCTCTAATCCAAAGTCCACCACTTCAAACGGTGACCTGTTTTTTCAGATTGACACTTCCAATACACAGTCAAA CACGGAGCTTGATTGTGTGCAGGCTCTGAAAACAGTAGTCAACCTGCCTGATGATAGGTTGGATGTTACAGAGTCCATTGTCTTGAGGGATAACCAACAT GACCAACCTTCAGAAGCTGATGCTGAGAAAGCACCCAATGATATTGCTTCCAGGGAATGCGATCATGGTGGAGGAAAAGAGCTGGTTATTTCAGCTGGTC CTGAATGTCCCCCTTGTGCTGAATCAGCCAAGACTGAGAATGAAACTGGTCCTGCTCTGCTCAATGGCTTGGAAAAAGATGGAAATGAAGGTCAAAATGG TAATGCAGCAATGGGAACGGAACGATTCAATTCAGAGTCCTCTTGCACCCAAGATAGCTTAAGCCTGGATGCAAACAATGGCTGTGATCCTTGTGATAAT CGTAGAAATGATGACACCAATGAAATTCTTTTGAAAGAATCATCAGAATTTGAAGGAACACGAAGTTTACCATCGGGTAATATAGGAAATGAAAAGAAAG AGACTAACTCGATCTCTGCAATCAATGATGGTTCTGTGCATGAAAACTACTCTGGCAATGATTCTACTGTCAAAAATGAGGAAGAAAGGAGAACAACTTT TCACTCTCTGGTGAAGTGTACTAATCTTGAAGGAGTGGAACAAAATGACCATGTTGCCTCTGAGGCTGATACAAAGGCGGGCAACATGTTGGCTGATAGT TCTAATTCCAACAGGGAAATAATTTACCCCAGTGGTCCCCAGGGCTCTTTGGATCCTCCTGTTCAAGAGCTTCCCCAGCCTATTTTGTTAGAGAAAAACT CTTTTGTTGCCACTGATCCTCAATCTTGTTCGAATACACATGTTAAAGTGGTAGACAAGTCTCATGAAGATTCTATTTTGGAAGAGGCACGGGTTATAGA GGCTAAGCGCAAGAGGATTGCAGAATTATCTGTTGCATCTGTGCATTCAGAGAATCGCCGGAGATCTCACTGGGATTTTGTCCTTGAAGAAATGGCATGG CTGGCAAATGATGTTGCACAGGAGCGTCTCTGGAAGATGACTGCTGCTGCTCAAATATGTCGACGAATTGCTTTTACTTCTCGATTGAGAGTTGAAGAGC AGAATCATCATTTGAAGCTAAAAAACGTCGCTTACAGTCTTGCTAAGGCTGTCATGCAGTTCTGGCATTCAGCAAAGGTGTATCTAAGTAACAATTGTCA CAGTGTTGGTTCAAAGAATGGGAAGCATGAGGTGGGGATGTTTGTTGGGAATGAATTTTCTGTCAACAAGTTTGGAGATATTGATAAGGAGCAGGTGGCA TGCAAAGAGTTAGAGAAACAAAATCGTGCCAAAAACATTGCGCATTCCATTCATGGATATGCTGTAAGGTTTTTGAAATATAACAGTTCTCCATTTCCTT CCTTTCAAGCAGAAGCACCAGCAACTCCTGATAGAATAGCTGATTTGGGCATTGTGGACACTTCATGGGATGATCGCCTTACTGAAGAAAGCCTGTTCTA CGCAGTTCCCTCAGGTGCCATGGCAATGTACAGATTGTCCATTGAATCTCATATTGCGCAGAGTGAGAAAACTCGCAGTAGCATGCAGGAGGAAGTCGAT ACATCCATGTATGACACTCCAGCAGATTTTGGATATCATGATACTGCTGCATACGATGAGGAGGAAGGAGAAACAAGTGCTTACTATATGCATGGAGTCT TTGAAGGTAGCAAGTCAGCAAAACATGACCAAAAGAAACGGAAAAGCTTAACAAAGTCACCCTCTGCAAGATCTTATGATCTGGGAACTGATTCACCTTA TGGACACTGCACCACTGGGCCACAACAAAATGTATTGATGGGGAAAAGACCTGCTAGTAATCTTAATGCTGGCTCAATCCCAACAAAACGCATGCGTACT GCTTCTAGACAGAGGTTTACAAGTCCTTTTACTGCTGGAACTGCTGGGGTTTTACTCCAGGCTCCAGTGAAGACAGATGCATCGAGTGGAGATACCAATT CTTTTCAGGATGATCAGAGTATTTTGCATGGTGGGTCACAAATTCAGAAAAGTGTGGAGGTTGAGTCCGCTGCGCATTTCGAAAGGCAGTTACCATATGA CTACGCAGAGACATCAACAAAACCGAAGAAGAAGAAGAAGGCAAAGCACCTGGGTTCTGCTTATGAGCAGGGGTGGCAGTTGGATTCTACTGGTCATAAT GAACAGAGGGATAATTTCAAAAAGAGATCGGAGAGTCATCATTTGGACTCTAATGGAACCAGTGGTTTATATGGGCAACATACCACAAAGAAGCCAAAGA TATCTAAGCAATTGCTAGATAATACTTTTGACAACATGGTTCAAATGACCGGGTCCATCCCATCTCCAGCTGCTTCCCAGATGAGTAATATGTCAAACAC AAATAGATTCATCAAATTGATTGGTGGCAGGGAACGAGGCAGAAAAAATAAATCAATGAAGATGTCTGTTGGGCAGCCAGGTTCTGGAAGTCCCTGGTCA CTTTTTGAAGACCAGGCTCTTGTTGTTCTTGTGCATGACATGGGTCCTAATTGGGAGCTTATAAGCGATGCTATCAACAGCACTGTTCAATTCAAGTGTA TATTCCGCAAGCCTAAAGAATGCAAAGATCGTCACAAAATCTTAATGGATAAGGGTGCTGGTGATGGGGCTGATAGTGCTGAGGATTCAGGATCTTCTCA ATCCTACCCATCAACTTTGCCTGGCATTCCAAAGGGCAGTGCCAGACAGTTGTTTCAACATTTGCAAGGGCCGATGCAAGAGGATACCCTGAAGTCTCAT TTTGAGAAAATCATCATTATTGGGAAGAAACATCATTACAAAAGGAGTCAGAATGAAAACCAGGATCCCAAGCAAATAGCAGCAACTCACAATTCTCATT TTATTGCTCTTTCCCAAGTTTGCCCAAACACTAAATGGAGGTGTCCTAACGCCCCTTGA
AA sequence Show only first row Show all	>Potri.002G243400.18 pacid=42778360 polypeptide=Potri.002G243400.18.p locus=Potri.002G243400 ID=Potri.002G243400.18.v4.1 annot-version=v4.1 MHGCGSGYALLVNAEVDSMGGVVDGGVGIATKTSPRRAAIEKAQVELRQEYDVREERRRELEFLEKGGNPLDFKFVNATSVSVQSTSLTDHHVEQFVTSE AKGSFPLTASPHGDSVESSGRPGATPVCEPNSADNFDGENELLEVERKRKHPSRRNNVTQSEQSSQMDGIHNAKESEDSAIFRPYARRNRSRPNRDGARS SSTDIVQSSVGHGSSLPARGEARDVKGLVTETDDHKAQIITSISNPKSTTSNGDLFFQIDTSNTQSNTELDCVQALKTVVNLPDDRLDVTESIVLRDNQH DQPSEADAEKAPNDIASRECDHGGGKELVISAGPECPPCAESAKTENETGPALLNGLEKDGNEGQNGNAAMGTERFNSESSCTQDSLSLDANNGCDPCDN RRNDDTNEILLKESSEFEGTRSLPSGNIGNEKKETNSISAINDGSVHENYSGNDSTVKNEEERRTTFHSLVKCTNLEGVEQNDHVASEADTKAGNMLADS SNSNREIIYPSGPQGSLDPPVQELPQPILLEKNSFVATDPQSCSNTHVKVVDKSHEDSILEEARVIEAKRKRIAELSVASVHSENRRRSHWDFVLEEMAW LANDVAQERLWKMTAAAQICRRIAFTSRLRVEEQNHHLKLKNVAYSLAKAVMQFWHSAKVYLSNNCHSVGSKNGKHEVGMFVGNEFSVNKFGDIDKEQVA CKELEKQNRAKNIAHSIHGYAVRFLKYNSSPFPSFQAEAPATPDRIADLGIVDTSWDDRLTEESLFYAVPSGAMAMYRLSIESHIAQSEKTRSSMQEEVD TSMYDTPADFGYHDTAAYDEEEGETSAYYMHGVFEGSKSAKHDQKKRKSLTKSPSARSYDLGTDSPYGHCTTGPQQNVLMGKRPASNLNAGSIPTKRMRT ASRQRFTSPFTAGTAGVLLQAPVKTDASSGDTNSFQDDQSILHGGSQIQKSVEVESAAHFERQLPYDYAETSTKPKKKKKAKHLGSAYEQGWQLDSTGHN EQRDNFKKRSESHHLDSNGTSGLYGQHTTKKPKISKQLLDNTFDNMVQMTGSIPSPAASQMSNMSNTNRFIKLIGGRERGRKNKSMKMSVGQPGSGSPWS LFEDQALVVLVHDMGPNWELISDAINSTVQFKCIFRKPKECKDRHKILMDKGAGDGADSAEDSGSSQSYPSTLPGIPKGSARQLFQHLQGPMQEDTLKSH FEKIIIIGKKHHYKRSQNENQDPKQIAATHNSHFIALSQVCPNTKWRCPNAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	0	1
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	1.41	0.8943
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Potri.012G058100 [exp]	4.69	0.8477
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	6.24	0.8560
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	6.48	0.8673
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	6.63	0.8585
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	7.07	0.8603	SDG29.1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	8.94	0.8671
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	9.00	0.8622
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	9.74	0.8771
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.010G023201 [exp]	10.67	0.8508

Compare expression of checked genes

Potri.002G243400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.