Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48730 691 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 396 / 1e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06430 330 / 1e-107 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 163 / 4e-44 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74850 162 / 1e-42 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G39980 144 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 142 / 7e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35130 136 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G18110 137 / 4e-34 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 135 / 7e-34 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058300 [exp] 409 / 9e-139 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 343 / 4e-113 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 333 / 6e-109 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 155 / 3e-40 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G141800 [exp] 152 / 4e-40 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.005G082400 [exp] 151 / 4e-40 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.007G123900 [exp] 155 / 6e-40 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 152 / 6e-39 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 145 / 5e-37 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022787 [exp] 703 / 0 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 700 / 0 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 392 / 6e-132 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000862 [exp] 337 / 1e-110 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 326 / 3e-106 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 319 / 6e-104 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 244 / 8e-78 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039149 [exp] 154 / 7e-40 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035850 [exp] 149 / 4e-39 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033127 [exp] 151 / 1e-38 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G243600.8 pacid=42780079 polypeptide=Potri.002G243600.8.p locus=Potri.002G243600 ID=Potri.002G243600.8.v4.1 annot-version=v4.1 ATGGCTTCTCTGTCCCCTTCCACAAATTTGTTCCAGCAATCGTTTAATTGGAAGCTGCAAACAAAGTCGAAAGTGACACCGAGTTGTGCATCCAGACCCG AAACCAAATCCAATTTCGCTTCCTCTTCCGCAAACAATAATGTTGCTATAGGTAGGAGCGAGAGAGGAGAGATGACGAGAAGGGAAATAGAGTGGGAAAA GCTGAAGAAGAAAGAAGAGAAAGAGAGAAAAGAAGAGGTTAACAGGAAAATTGCGTCACAGAAGGCGATATCTGTGATTCTGCGAAGAGAGGCTACTAAA GCTGTAATTGAGAAGAAAAGAGGTCCTACTAATTCAAAGAAGTTGCTTCCGCAAACTGTCCTTGAAGCTCTTCATGAAAGAATCACTGCATTGCGCTGGG CTTCTGCTCTCGAGGTTTTTGAACTACTTCGAGAGCAGCTATGGTACAGGCCTTATGCTGGTATGTATGTCAAACTCATCGTCATGCTCGGAAAGTGTAA ACAACCAGACAAGGCCCACCAACTATTTCAAGCTATGATTGATGAAGGCTGTGCTGTGACTCATGAATCCTACACGGCTCTTTTGTCTGCCTATGGAAGA AGTGGTCTCTTTGACAAAGCATTTTCTATTATGGAGGAAATGAAAAACACTCCTGATTGCCGACCTGATGTCCACACTTATTCAATCCTCATAAAATCAT GCCTCCAAGTTTTTGCCTTTGACAAAGTGCAGGTGCTGCTTTCTGACATGGAATCTTTGGGAATCAGACCCAACACAGTCACGTACAATACTCTCATCGA TGCCTATGGCAAAGCAAAAATGTTTGCAGAGATGGAAGCAACACTAATGGAGATGTTGAGTCAGCAGGATTGTGAGCCTGATGTTTGGACCATGAACTCA ACAATCAGAGCCTTCGGTGGCAGCGGACAAATGGAAATGATGGAGAATTGTTATGAGAAGTTTCAGAGTGCTGGGATTGAACCCAATATTAAGACATTCA ACATTCTCTTGGATTCCTATGGAAAAGCTGGAAACTACCAGAAAATGAGTGCAGTCATGGAATACATGCAAAGATACCACTACTCGTGGACCATTGTTAC CTACAATGTGGTGATAGATGCATTTGGACGAGCAGGGGATTTAAAACAGATGGAGTATTTGTTTAGGCTAATGCGGTCAGAGAGGATCAAGCCAAGTTGT GTTACACTTTGCTCTCTAGTGCGAGCTTATCGGGAAGCTGGGAAACCTGAGAAAATCGGGAGTGTTCTTCGTTTCATTGAGAATTCAGATGTAACTTTGG ATACTGTGTTTTTTAATTGTTTAGTGGATGCATATGGTAGGCTGGAATGCTTCGCGGAGATGAAAGAAGTGCTTGAGTTGATGGAGGAGAAAGGTTGTAA GCCTGATAAAGTTACATATAGAACAATGATTAAAGCTTATTCCATTAAGGGGATGACTAGCCACGCAAAGAAGCTTCGAAACCTTCTTGGATCAGTTGAG GTGACTCGGTCTCCGAAGAAGAAACCTGATTTTTGA
AA sequence Show only first row Show all	>Potri.002G243600.8 pacid=42780079 polypeptide=Potri.002G243600.8.p locus=Potri.002G243600 ID=Potri.002G243600.8.v4.1 annot-version=v4.1 MASLSPSTNLFQQSFNWKLQTKSKVTPSCASRPETKSNFASSSANNNVAIGRSERGEMTRREIEWEKLKKKEEKERKEEVNRKIASQKAISVILRREATK AVIEKKRGPTNSKKLLPQTVLEALHERITALRWASALEVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAYGR SGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESLGIRPNTVTYNTLIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNS TIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSC VTLCSLVRAYREAGKPEKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIKGMTSHAKKLRNLLGSVE VTRSPKKKPDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48730			Pentatricopeptide repeat (PPR)...		Potri.002G243600 [exp]	0	1
AT4G31040			CemA-like proton extrusion pro...		Potri.018G150000 [exp]	1.00	0.9392
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	6.00	0.9186
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.017G126700 [exp]	6.92	0.9116
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	20.61	0.8803	Pt-KUP3.1
AT5G20260			Exostosin family protein (.1)		Potri.006G064800 [exp]	23.23	0.8714
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	23.36	0.9088
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	23.91	0.9172
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	24.79	0.9072
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	28.61	0.9090
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.008G035500 [exp]	33.49	0.9148

Compare expression of checked genes

Potri.002G243600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.