Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07120 191 / 3e-57 RING/U-box superfamily protein (.1) AT3G25030 130 / 2e-35 RING/U-box superfamily protein (.1.2) AT4G13100 118 / 1e-30 RING/U-box superfamily protein (.1.2.3.4.5) AT4G22250 101 / 6e-25 RING/U-box superfamily protein (.1) AT4G03965 99 / 3e-24 RING/U-box superfamily protein (.1) AT1G62370 91 / 3e-21 RING/U-box superfamily protein (.1) AT3G06140 45 / 4e-05 RING/U-box superfamily protein (.1) AT5G04460 45 / 7e-05 RING/U-box superfamily protein (.1.2.3) AT1G18660 43 / 0.0002 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G34920 42 / 0.0008 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158900 [exp] 98 / 5e-24 AT4G22250 103 / 2e-27 RING/U-box superfamily protein (.1) Potri.002G224200 [exp] 98 / 6e-24 AT4G03965 116 / 7e-33 RING/U-box superfamily protein (.1) Potri.004G003101 [exp] 96 / 1e-22 AT4G03965 135 / 3e-39 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 43 / 0.0003 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.008G030100 [exp] 43 / 0.0003 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 43 / 0.0004 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G030600 [exp] 42 / 0.0004 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038180 [exp] 137 / 2e-37 AT3G07120 122 / 6e-33 RING/U-box superfamily protein (.1) Lus10025921 [exp] 137 / 3e-37 AT3G07120 117 / 3e-31 RING/U-box superfamily protein (.1) Lus10035335 [exp] 93 / 7e-23 AT4G22250 114 / 4e-33 RING/U-box superfamily protein (.1) Lus10029993 [exp] 92 / 2e-22 AT4G03965 118 / 2e-34 RING/U-box superfamily protein (.1) Lus10015152 [exp] 91 / 1e-21 AT4G03965 123 / 1e-35 RING/U-box superfamily protein (.1) Lus10034030 [exp] 45 / 7e-05 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10017455 [exp] 44 / 0.0002 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 44 / 0.0002 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10004419 [exp] 43 / 0.0004 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G243800.1 pacid=42777860 polypeptide=Potri.002G243800.1.p locus=Potri.002G243800 ID=Potri.002G243800.1.v4.1 annot-version=v4.1 ATGGAGGGTAGATACAGCAATGGCGGCGGCGGCGGCGATGACGGCAGTCGCAAGAGAATAACGCTGTTGGATGCACTTGAAAATAGTAGAGATAGAAGGA CCCTTGAGACAATATTAAGCATGGAAAAACAGCCGGGTCAGGCAAATCGGACACTACTGGATATAATCCGAGATGAAGAGAGCGGGTCGTTATTTGGACA CAAAGACAAAAAGAGCTGGAAAGCTTTCAGAGACAAGCTCCGTTTGAAGCGTGCCGGTTCTGCTTGGACATCTTCTGTTCATACCCCTGCTTCGGATATC CCCATCCCCGTGGAAAACAGGTTTCGCAATTCTAACATTAATAACGCTTCCTCCAGGTCTTTGATGACACGCCGTAATTCGGTGCGTTTCACCACCGTCT CGTCTGTTATATCGCCTGAGTTGGAGGAATCGGATGATAACTCGGGGATAGGTCCGAGCTCGAGGCCGCAAATGACTCGCCGGAGCTCAACTCGGTTTGG TTCAGCTATGCTGCAGGTTCAGTCTGAGTCAACTCACTCTGGTGACCCGGATGTGAGCATTCACGCGGTGGAAGATGGCCCGCCTTCTCGGGGTTTTAGA CCGCAAATCTCGCGGCACAATTCGACTCGGTTCCCGGTTGTCGATTCAACCCAGTCGGATGAGAATGATTTAGATCCGTCGGCACGTGAGGGCACGACAC GCCTGGGTACTGCATTGGCAGAGGAGAGACTGTTGTCGGCGAGGGAGGCAGTGGCAGCACAGGAGGCTGCAGAAGCAGCTGCACAGGAGGAAGCTGCAGC TACGGCAGCAGCCGAACATGAGGCCGAGGAAGGGGCAATGCCCATGCCCGGGAGTACGGAGACGCAGGAGCCGGTGAGGATGTCATTGATGGATTTGTTA GAGGAGACAGATAGGCAGATGGGGTTTGAGGGGTCTAGATATACAGTGGGGGATCTTGAGGCATGTGATGATGATGATGATGAAGATGAGGAGGAGGAGG ACGGTGGTGAAGAGGGTGACGGTGTTGCTGGTATAGAGTATACTTGCTGCGTGTGCATGGTTAGGCATAAAGGTGCAGCCTTTATTCCTTGTGGGCATAC ATTTTGCAGGCTGTGTTCAAGAGAGCTTTGGGTTCAAAGGGGCAATTGCCCTCTATGCAACGGTTTCATCTTGGAAATTCTTGATATATTTTGA
AA sequence Show only first row Show all	>Potri.002G243800.1 pacid=42777860 polypeptide=Potri.002G243800.1.p locus=Potri.002G243800 ID=Potri.002G243800.1.v4.1 annot-version=v4.1 MEGRYSNGGGGGDDGSRKRITLLDALENSRDRRTLETILSMEKQPGQANRTLLDIIRDEESGSLFGHKDKKSWKAFRDKLRLKRAGSAWTSSVHTPASDI PIPVENRFRNSNINNASSRSLMTRRNSVRFTTVSSVISPELEESDDNSGIGPSSRPQMTRRSSTRFGSAMLQVQSESTHSGDPDVSIHAVEDGPPSRGFR PQISRHNSTRFPVVDSTQSDENDLDPSAREGTTRLGTALAEERLLSAREAVAAQEAAEAAAQEEAAATAAAEHEAEEGAMPMPGSTETQEPVRMSLMDLL EETDRQMGFEGSRYTVGDLEACDDDDDEDEEEEDGGEEGDGVAGIEYTCCVCMVRHKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNGFILEILDIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07120			RING/U-box superfamily protein...		Potri.002G243800 [exp]	0	1
AT1G31330		PSAF	photosystem I subunit F (.1)		Potri.003G148900 [exp]	13.78	0.8425
AT5G22390			Protein of unknown function (D...		Potri.009G162800 [exp]	14.83	0.8165
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	15.00	0.8260
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.018G054700 [exp]	39.15	0.7073
					Potri.008G148266 [exp]	50.19	0.7546
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.008G038300 [exp]	50.29	0.7927
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	55.27	0.7587	Pt-ATMPK16.1
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.019G131600 [exp]	59.96	0.7694	RPT2.3
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	67.14	0.7411
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	86.79	0.7679

Compare expression of checked genes

Potri.002G243800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.