Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48720 282 / 1e-94 XRI1, XRI x-ray induced transcript 1 (.1.2) AT2G01990 67 / 5e-13 unknown protein AT1G14630 62 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G190000 [exp] 431 / 1e-153 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.008G140900 [exp] 76 / 1e-15 AT2G01990 148 / 3e-43 unknown protein Potri.010G100700 [exp] 75 / 2e-15 AT1G14630 166 / 1e-50 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038181 [exp] 308 / 4e-104 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2) Lus10025920 [exp] 276 / 1e-92 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2) Lus10013793 [exp] 70 / 3e-13 AT2G01990 118 / 1e-31 unknown protein Lus10039139 [exp] 67 / 2e-12 AT1G14630 120 / 3e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G244000.3 pacid=42779335 polypeptide=Potri.002G244000.3.p locus=Potri.002G244000 ID=Potri.002G244000.3.v4.1 annot-version=v4.1 ATGGATTATAACAATGACAATGGAAATGGTGAACGTTGGGGTTGGCAAGGTGAGGATTACTGTTTCCAAAAAGATGCTGGTGCTGTAGACGTTTCTCAAC GTTTATGGAATGAAGTGACTCTGAATGGCGAGGATCTTTCCTACATGCTTGATGAAACAACTCCGGTTAAGGCTTGTGCGGATTTGGCTTACCATGTTAA TCATGATGATAACATGAACAAGGAACCAGAAGAACGGAGGGAGACTTGTTTCCAATTTAAAAGACGTCGGCTACAGTTTGACACTCATTTAGCAGATTCC CCCTTTTGTGATGAAGATTTAACTTCTGTATTTTTAAAATCAAATGAGACAGAAGAGTCACTTGAAGAAGTTTTCCCTCAAGCATCACAGTGGGATTCTG GGTATCAAGATATGTCTGCCTCCTGTTACAATGGTCTGGATCCGTCATCTGATCCTTGGATTGCAGACTGCTTTAATGACTCGGGGATGCATTTCAGTCC CAATGATATGAATTTCCCTGGAGCATCTGATATCCAAATTGATATTTCAGATTTCTGCAATGACCCGCCTGAGTTTGAAGCTAGTACGGTTCAAAAATGT GTTCCTCGAACACCTCGAAATGTTGTTTTTAAAGGTACAAAGTCCTTCATCCAGACACCCACTAAATTAGCTACTTCTGTTGCCTATCCATTTGCTTTCA TCAAACCCTGCGGGGTGCATGGAGATGTTACTCTGAATGAAATAAACCAGCGGATCCGTACTCCACCACCATCAAAATCAAAGCAAAAGGATGAAGATCC TGTTGTTTACCCCATGTCTGCTTTCTCTGGGAAGCCTGTTGTTGGCAAAACTAAAATTCGCACAGAGGGAGGGAAAGGAAGTATTACAATAATGAGAACC AAGGGCTGA
AA sequence Show only first row Show all	>Potri.002G244000.3 pacid=42779335 polypeptide=Potri.002G244000.3.p locus=Potri.002G244000 ID=Potri.002G244000.3.v4.1 annot-version=v4.1 MDYNNDNGNGERWGWQGEDYCFQKDAGAVDVSQRLWNEVTLNGEDLSYMLDETTPVKACADLAYHVNHDDNMNKEPEERRETCFQFKRRRLQFDTHLADS PFCDEDLTSVFLKSNETEESLEEVFPQASQWDSGYQDMSASCYNGLDPSSDPWIADCFNDSGMHFSPNDMNFPGASDIQIDISDFCNDPPEFEASTVQKC VPRTPRNVVFKGTKSFIQTPTKLATSVAYPFAFIKPCGVHGDVTLNEINQRIRTPPPSKSKQKDEDPVVYPMSAFSGKPVVGKTKIRTEGGKGSITIMRT KG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.002G244000 [exp]	0	1
AT3G54750			unknown protein		Potri.006G199200 [exp]	3.31	0.8772
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	9.27	0.8669
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	10.53	0.8589	DMT901,Pt-MET1.2
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	17.66	0.8517
AT3G16200			unknown protein		Potri.003G051200 [exp]	17.88	0.7807
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Potri.006G081600 [exp]	20.34	0.7623
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	23.49	0.8350
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	23.76	0.8505	Pt-UBP21.2
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	26.07	0.8190
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	31.74	0.7783

Compare expression of checked genes

Potri.002G244000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.