Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04850 311 / 3e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 260 / 1e-85 unknown protein AT2G01650 49 / 2e-06 PUX2 plant UBX domain-containing protein 2 (.1) AT3G20630 46 / 3e-05 PER1, ATUBP14, TTN6, UBP14 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316400 [exp] 328 / 4e-111 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.017G056900 [exp] 322 / 1e-108 AT1G04850 577 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.014G160400 [exp] 53 / 2e-07 AT5G35690 440 / 2e-146 unknown protein Potri.008G133700 [exp] 50 / 8e-07 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.011G125800 [exp] 43 / 0.0002 AT3G20630 1258 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Potri.001G408800 [exp] 42 / 0.0003 AT3G20630 1236 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038183 [exp] 347 / 3e-112 AT3G07140 777 / 0.0 GPI transamidase component Gpi16 subunit family protein (.1.2) Lus10037827 [exp] 296 / 2e-98 AT1G04850 590 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10017103 [exp] 274 / 3e-89 AT1G04850 573 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Lus10021798 [exp] 50 / 9e-07 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10002262 [exp] 50 / 1e-06 AT5G35690 585 / 0.0 unknown protein Lus10034612 [exp] 50 / 2e-06 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10000922 [exp] 49 / 2e-06 AT5G35690 575 / 0.0 unknown protein Lus10037870 [exp] 42 / 0.0008 AT3G20630 1269 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1) Lus10038564 [exp] 41 / 0.001 AT3G20630 1142 / 0.0 TITAN6, phosphate deficiency root hair defective1, ubiquitin-specific protease 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0214 [poplar] [flax] PF09409 [poplar] [flax] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Potri.002G244500.1 pacid=42779338 polypeptide=Potri.002G244500.1.p locus=Potri.002G244500 ID=Potri.002G244500.1.v4.1 annot-version=v4.1 ATGGAGTCTCTACAGGAATTGAGTGTCTTGGAAGCAAACAAGCGATTGCTTAAGGAACTTGAAGACATGGGTTTCCCACGGATCCAAGCTGCGAAAGCAC TTCATTGTTCTGGCAATACTGACATTGAAGCTGCCATAAATTGGATCGTTGATCACGAGAATGAACCAAGCATCGATCCAATGCCCCTGATAGCAGTGAA CATTGATATCGACTCTCCTCAGCCAATTCAAACTACGGAGGAAATGCAAATAAAAGCACAAGAATTAAGGAATCAAGCTCGGAAGGAGAAGGAAGATGAA GAAAAGAGATTGGAACGAGAAAGGGAGAAGGAAAGAATTCGAGCTGGTAAGGAAATCCATGAGGCAAAGCGAATTGCTGAGGATAATGAAAGAAAACGTT ATTTAGCCTCGAGGAAAGCAGAGAAAGAGGAAGAGAAAAGAGCAAGGGAGAAAGTTCGTCAGAAACTTGAAGCTGATAAGAACGAACGAAGGCGGATGCT TGGATTGCCATCAGTAAGCCATACAGCTACAAAACTTTCTAGCCCTTCCACACATGATAAAAAGAACTATGTCAGCGTTGCCTCTGTCTCAAAAGTAGAG CAGTTAAGAGAATGTTTACGGTCTCTCAAGCGCAGTCACAAGGATGACGATGCCAGAGTCAAAAGGGCCTTTCAAACTCTTCTTGTATATGTTGGGAATG TTGCACAGAATCCTGACAAGGAAAAATTCAGGAAAATTCGCATTGGTAATCCATTATTCCAGAGTAGGGTTGGAAGATTGAGAGGAGGCGTTGAGTTTCT TGAACTATGTGGGTTTGAAAGAATCGAAGAGGACAAATTCTTGTTTCTTCCTCGTGATAAGGTTGACTTGGCTGTTCTAAACTCAGCAGGACTGGAGATA AAGTCTGCAATGTCGAATCCTTTCTTTGGACTTCTCTCCAATCCGTAA
AA sequence Show only first row Show all	>Potri.002G244500.1 pacid=42779338 polypeptide=Potri.002G244500.1.p locus=Potri.002G244500 ID=Potri.002G244500.1.v4.1 annot-version=v4.1 MESLQELSVLEANKRLLKELEDMGFPRIQAAKALHCSGNTDIEAAINWIVDHENEPSIDPMPLIAVNIDIDSPQPIQTTEEMQIKAQELRNQARKEKEDE EKRLEREREKERIRAGKEIHEAKRIAEDNERKRYLASRKAEKEEEKRAREKVRQKLEADKNERRRMLGLPSVSHTATKLSSPSTHDKKNYVSVASVSKVE QLRECLRSLKRSHKDDDARVKRAFQTLLVYVGNVAQNPDKEKFRKIRIGNPLFQSRVGRLRGGVEFLELCGFERIEEDKFLFLPRDKVDLAVLNSAGLEI KSAMSNPFFGLLSNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.002G244500 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Potri.011G016100 [exp]	3.60	0.9570
AT3G17380			TRAF-like family protein (.1)		Potri.008G099600 [exp]	4.47	0.9569
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	5.91	0.9526
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	7.14	0.9541
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	8.71	0.9530
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	9.94	0.9487
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.005G122700 [exp]	10.39	0.9462
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	11.22	0.9525
AT2G41200			unknown protein		Potri.006G038600 [exp]	12.00	0.9421
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	12.24	0.9477

Compare expression of checked genes

Potri.002G244500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.