Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65450 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1.2.3) AT5G41040 182 / 2e-52 HXXXD-type acyl-transferase family protein (.1.2) AT1G03390 176 / 6e-50 HXXXD-type acyl-transferase family protein (.1) AT3G48720 159 / 6e-44 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 156 / 5e-43 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 154 / 6e-42 HXXXD-type acyl-transferase family protein (.1) AT5G63560 145 / 4e-39 HXXXD-type acyl-transferase family protein (.1) AT5G57840 136 / 1e-35 HXXXD-type acyl-transferase family protein (.1) AT2G40230 120 / 8e-30 HXXXD-type acyl-transferase family protein (.1) AT5G17540 109 / 8e-26 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G180000 [exp] 202 / 7e-60 AT1G65450 565 / 0.0 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.015G100800 [exp] 189 / 2e-55 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 187 / 3e-54 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 176 / 4e-50 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 168 / 1e-47 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.003G183900 [exp] 165 / 4e-46 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 164 / 1e-45 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.002G032200 [exp] 157 / 6e-43 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G165200 [exp] 155 / 3e-42 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038184 [exp] 519 / 0 AT1G65450 200 / 2e-59 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10043189 [exp] 185 / 2e-53 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 183 / 9e-53 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10029920 [exp] 178 / 1e-50 AT1G65450 490 / 9e-172 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10012552 [exp] 177 / 2e-50 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10004481 [exp] 174 / 6e-48 AT1G65450 490 / 3e-169 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10022163 [exp] 163 / 2e-45 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 162 / 5e-45 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 160 / 4e-44 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10017744 [exp] 153 / 3e-41 AT1G03390 643 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.002G244600.1 pacid=42777675 polypeptide=Potri.002G244600.1.p locus=Potri.002G244600 ID=Potri.002G244600.1.v4.1 annot-version=v4.1 ATGGAGGGGGTGAAGTTGGTGGAGAAAGTTGTGATTGTACCAGAGATGCCCACAAATCGAAGGCGAATTTTCTTATCAAACTTAGACTTGCCTCTTGTTG CATATCAAGAATCCGTTTCCTTTTATGATCCTCCAGAGAACAAAATCAGCTTCTCTGAATCTTACAATACCCTTTACCGTGCGCTCCGTTCTTTGCTAGT GCCTTACGACTTTTTTGCTGGACGGCTTGTGCCAGCTTTGGAAGATAACAGTAGGTTGGAGATTGACTGTAATGGTGCTGGTATTGTTGTTGCTGCAGCT AGAACTGACACCAGATTGAGCCACCTTGGTGGGCTCTTTGCACCCAAACCAGATTTCAAACAGCTGGTGGCTTTCTTGCGTGAAGAGGGAGAGGATGAAA TGGAGTTCAAAGACAAGCCCCTTCTTTATATACAGTTGACACAGTTCGGATGTGGAAGTTTAGCACTTGCCTCCCGGTACAATCACTGTGTCTTGGACGG GGCTGCTGCCAGGGATTTTGAGAAAAACTTGGCTGCATTCACTCGAGGTGATGATTTGGTCATAGTTCCAAATCCTGATCGAACAATCTTCAAAGCTAGG AACCCACCAAGAATTAGTCACCCACACCATGAGTACTCCAAACCCAGTGAAACTAGAGACAACTTTTTCTCAGTTGGAGGCAAAAGGTGCACTAATGTCA TGCACTTTAGTACTCCACATAATACGACTCATTTGATCCATATCCCCCCTCAACGCATTGCCAGCCTAAAAATGGCAGCCCTCAAGGATGGGAAATTGAA AAAGTGCACCACTTTTCACGCCATAGCTGCAAAGGTATGGAAGGCAAGGAGCATTGCAACAAAGATTCATGATGAGGTATGTAGCACAATGTTGTTTCCA GTTGACGTGAGAAGAATTGTGGTGCCACCAGTTCAAATTGGATTTGCTGGGAATGCTTTGGTTCCCGGATGTGCACGAGCAAGTTTGAGAGAACTCAAGG ACAAAGAGGATTCTTACATTGTAAGGAAAGTGCAAGAAGGGGTAGAGAGATTCGATGATGAGTATGTGAGGTCTGGGATAGATTGGTTAGAGGTCCACAG AGGGACGCCTTGCAATGAGAATAGCTTCTCATTAGTGGCATGGTTTCGGCTGGGGCTAGAGGAAGATGTATTTTCTTGGGGGAAACTTAAATATGCTACT CCAGTTGTGTTAAAACCTGGTTTGGTCTTCCTGTTGCCTGGACTAGAAGGTGATGGAGGCCTTAATATTTGCCTGGACCTGCCTGATGATCAAGTGGACG AGTTCCACAGATTATTGATGGAATAA
AA sequence Show only first row Show all	>Potri.002G244600.1 pacid=42777675 polypeptide=Potri.002G244600.1.p locus=Potri.002G244600 ID=Potri.002G244600.1.v4.1 annot-version=v4.1 MEGVKLVEKVVIVPEMPTNRRRIFLSNLDLPLVAYQESVSFYDPPENKISFSESYNTLYRALRSLLVPYDFFAGRLVPALEDNSRLEIDCNGAGIVVAAA RTDTRLSHLGGLFAPKPDFKQLVAFLREEGEDEMEFKDKPLLYIQLTQFGCGSLALASRYNHCVLDGAAARDFEKNLAAFTRGDDLVIVPNPDRTIFKAR NPPRISHPHHEYSKPSETRDNFFSVGGKRCTNVMHFSTPHNTTHLIHIPPQRIASLKMAALKDGKLKKCTTFHAIAAKVWKARSIATKIHDEVCSTMLFP VDVRRIVVPPVQIGFAGNALVPGCARASLRELKDKEDSYIVRKVQEGVERFDDEYVRSGIDWLEVHRGTPCNENSFSLVAWFRLGLEEDVFSWGKLKYAT PVVLKPGLVFLLPGLEGDGGLNICLDLPDDQVDEFHRLLME

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.002G244600 [exp]	0	1
					Potri.003G204425 [exp]	5.65	0.8247
					Potri.012G066225 [exp]	8.18	0.8412
AT4G03180			unknown protein		Potri.014G134700 [exp]	14.07	0.7773
AT3G09720			P-loop containing nucleoside t...		Potri.019G064900 [exp]	14.31	0.8141
AT4G18840			Pentatricopeptide repeat (PPR-...		Potri.001G108500 [exp]	17.14	0.8124
AT1G17285			unknown protein		Potri.001G162300 [exp]	18.92	0.8315
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	19.00	0.7812
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	19.59	0.8099
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.009G044300 [exp]	20.49	0.7899
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.002G151300 [exp]	26.94	0.7981	GA20ox2-1

Compare expression of checked genes

Potri.002G244600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.