Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07180 527 / 0 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245000 [exp] 696 / 0 AT3G07180 671 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038186 [exp] 557 / 0 AT3G07180 730 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Lus10025916 [exp] 540 / 0 AT3G07180 736 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Lus10022778 [exp] 233 / 6e-73 AT3G07180 357 / 2e-117 GPI transamidase component PIG-S-related (.1.2.3) Lus10022779 [exp] 0 / 1 AT3G07180 105 / 9e-40 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10510 [poplar] [flax] PIG-S Phosphatidylinositol-glycan biosynthesis class S protein
Representative CDS sequence Show only first row Show all	>Potri.002G244801.1 pacid=42778416 polypeptide=Potri.002G244801.1.p locus=Potri.002G244801 ID=Potri.002G244801.1.v4.1 annot-version=v4.1 ATGCCTGTTGGTGCTGATGGGAGGATTGTTCTTTCGTTTAACTTGCTCAATGCGGATCCCAGTGATTGGACTTACGATTGGGATTTTCGGAAAATAGATG AAACTCTGTTGGCTCCTATGATTGATGCGTTGGGACCGATAGCAAACATAAGCGTGGAGAGCCAAGTTTTGTACCATACTCCAAAGTTTTCAGTTTCTTC TTGGGATGAAAAATTAGGTGGCTATATTTTTAGTACAAAGGATCTTCCTTTCTTTGTGAACTCAAATGAGTGGCACTTGGATACTTCTATTGCTGCTGGT GGGCGATCGAAAATCTTGCAATTTGTGGTATATGTGCCATCTGCAAAGGAATGTCCCCTTCTTCTACAGCTTCCAAATGGAGAGATTTCTAAAACAAATG CCTTTATATCTCCAATGTGGGGAGGTGTCATGGTGTGGAATCCTCAAAGCTGTTCAAGGGATTCAGACAGTGAGCTTCTTGTTAGGCATATAATGTCTCC TGAGGACCTTCAGAAAGTTTTTGAAGTTTTTGTGGGGCAATTCCGGCAACTTTTTGGTCTAAAATCTGGTAGTCTTCATGTGGGTGCAATGGGCACGTAC AGTCTTTTAGCCAGTGAAAAAGGCTTCACAGAATGGGAATTGGATGTCTTGTCACGGCAACATACGTGTTTTAATATTCACTCAAGCGCCACAACTCTGG GATCTCTTTCAAAATTGGTTCAATCATTGCCTAGGATGATTATTATGGATGAGATAGGAAAGCAGGTAAAATTTTCCCTTGAAGCAGCAAAATTAGCTCG AGTTAACGCCTCTCTTGGATTTTACGATGCTTCAGCTGTGTCCTCAAGACAAGCAAGATCTTTGGCAGAGGATGCCTTCTTCCACCCATCAATCATGTCT GTCAGCTACTACTCGTTTGAGCACTGTTTTGCAGTGTACTCGCCATTCTTCTTGCCAGTTTCAATGCATGTCCTCCTTGCTGCATTAAGAGAATGGAGAA GATACAAGCAAGAAAAGGCAAAGTTACTTGCTATGGAAGGCTAA
AA sequence Show only first row Show all	>Potri.002G244801.1 pacid=42778416 polypeptide=Potri.002G244801.1.p locus=Potri.002G244801 ID=Potri.002G244801.1.v4.1 annot-version=v4.1 MPVGADGRIVLSFNLLNADPSDWTYDWDFRKIDETLLAPMIDALGPIANISVESQVLYHTPKFSVSSWDEKLGGYIFSTKDLPFFVNSNEWHLDTSIAAG GRSKILQFVVYVPSAKECPLLLQLPNGEISKTNAFISPMWGGVMVWNPQSCSRDSDSELLVRHIMSPEDLQKVFEVFVGQFRQLFGLKSGSLHVGAMGTY SLLASEKGFTEWELDVLSRQHTCFNIHSSATTLGSLSKLVQSLPRMIIMDEIGKQVKFSLEAAKLARVNASLGFYDASAVSSRQARSLAEDAFFHPSIMS VSYYSFEHCFAVYSPFFLPVSMHVLLAALREWRRYKQEKAKLLAMEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07180			GPI transamidase component PIG...		Potri.002G244801 [exp]	0	1
AT3G07180			GPI transamidase component PIG...		Potri.002G245000 [exp]	2.00	0.9371
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.011G139900 [exp]	4.89	0.8343	Pt-AERO1.2
AT5G57070			hydroxyproline-rich glycoprote...		Potri.006G145900 [exp]	5.47	0.7981
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	13.19	0.7841
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	13.41	0.8584
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.002G117400 [exp]	16.70	0.8052
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	26.73	0.8162
AT5G40200		DEGP9	DegP protease 9 (.1)		Potri.012G077900 [exp]	28.35	0.8019
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	29.24	0.7908
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.014G117600 [exp]	30.33	0.7722

Compare expression of checked genes

Potri.002G244801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.