Plant FIBer expression Database

Potri.002G245000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07180 672 / 0 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G244801
[exp]
696 / 0 AT3G07180 526 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038186
[exp]
731 / 0 AT3G07180 730 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Lus10025916
[exp]
728 / 0 AT3G07180 736 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022778
[exp]
328 / 3e-106 AT3G07180 357 / 2e-117 GPI transamidase component PIG-S-related (.1.2.3)
Lus10022779
[exp]
116 / 7e-30 AT3G07180 105 / 9e-40 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10510 PIG-S Phosphatidylinositol-glycan biosynthesis class S protein
Representative CDS sequence
>Potri.002G245000.1 pacid=42779478 polypeptide=Potri.002G245000.1.p locus=Potri.002G245000 ID=Potri.002G245000.1.v4.1 annot-version=v4.1
ATGGCAGAAGAAATCACCGAATCTCCAAATGACCCACCACCAGAAACACCGCCAACTCCACCATCTGAACCGGAATTCGACTCGAAAACCATGCGCAGAA
CAAAACCGGGGTTGAAGCGCCTCTTCCTCACTTTCACAGTCCTTGTCTCCTTCCTTTTAGGTTTCCCTTTTTTATTCAAATCCGTTGAGATCTACCGCTC
TCCGCTTCCTTTCCACGACATCGATAGCCTCTCAAACGACGTCGTCTCCAATCCATTCCTCTTTCCTTGCCATTTCCAAGCCATTCTTGTCCCCTCCGAT
CCCAAATCTTCTTCAATTGACCTAAATTTAGACGAGCTTGAACTCTCAATTCGCTCTAAGATTACCAAATTAGCCTCCAAAGGAATAGCATCTCAATGCG
GAGCCTGCACCAACAACTTCACTCTCTCGCTAACCCTAGACGACGGGGATTGCACGCAATCTTCGTCTAAGTTTTACAAGTGCGGCGCGATCCGAGCCGT
TGATTTGGATTTCGGTGACGATGAGAGTGTCGATGAAGCTTTGGAGTCTGCTGGTTTGGATTCTGGCGGGAAAGTGTATAGTGTGGTGGTGGTGGTGAAT
GGAGATGGTGTGGATGGAGTGAAAGTGGTTGTTGGGAAGTACCGGCACGCTTGGATTGTAGGGAGGGATTGGGGAGTTGAAGAAGTGGCAGAGAGATTGG
CGGAGATTTTTGTCAGAGTGTTTGTGAATGGCGGGAGAGAGGAAGGGTTGATTCATGGGGAGTTTATGCCTGTTGGTGCTGATGGGAGGATTGTTCTTTC
GTTTAACTTGCTCAATGCGGATCCCAGTGATTGGACTTACGATTGGGATTTTCGGAAAATAGATGAAACTCTGTTGGCTCCTATGATTGATGCGTTGGGA
CCGATAGCAAACATAAGCGTGGAGAGCCAAGTTTTGTACCATACTCCAAAGTTTTCAGTTTCTTCTTGGGATGAAAAATTAGGTGGCTATATTTTTAGTA
CAAAGGATCTTCCTTTCTTTGTGAACTCAAATGAGTGGCACTTGGATACTTCTATTGCTGCTGGTGGGCGATCGAAAATCTTGCAATTTGTGGTATATGT
GCCATCTGCAAAGGAATGTCCCCTTCTTCTGCAGCTTCCAAATGGAGAGATTTCTAAAACAAATGCCTTTATATCTCCAATGTGGGGAGGTGTCATGGTG
TGGAATCCTCAAAGCTGTTCAAGGGATTCAGACAGTGAGCTTCTTGTTAGGCATATAATGTCTCCTGAGGACCTTCAGAAAGTTTTTGAAGTTTTTGTGG
GGCAATTCCGGCAACTTTTTGGTCTAAAATCTGGTAGTCTTCATGTGGGTGCAATGGGCACGTACAGTCTTTTAGCCAGTGAAAATGGCTTCACAGAATG
GGAATTGGATGTCTTGTCACGGCAACATACGTGTTTTAATATTCACTCAAGCGCCACAACGCTGGGATCTCTTTCAAAATTGGTTCAATCATTGCCTAGG
ATGATTATTATGGATGAGATAGGAAAGCAGGTAAAATTTTCCCTTGAAGCAGCAAAATTTGCTCGAGTTAACGCCTCTCTTGGATTTTACGATGCTTCAG
CTGTGTCCTCAAGACAAGCAAGATCTTTGGCAGAGGATGCCTTCTTCCACCCATCAATCATGTCTGTCAGCTACTACTCGTTTGAGCACTGTTTTGCAGT
GTACTCGCCATTCTTCTTGCCAGTTTCAATGCTTGTCCTCCCTGCTGCATTAAGAGAATGGAGAAGATACAAGCAAGAAAAGGCAAAGTACTTGCTATGG
AAGGCTAAAGAAAAGGTGGCATCTTAG
AA sequence
>Potri.002G245000.1 pacid=42779478 polypeptide=Potri.002G245000.1.p locus=Potri.002G245000 ID=Potri.002G245000.1.v4.1 annot-version=v4.1
MAEEITESPNDPPPETPPTPPSEPEFDSKTMRRTKPGLKRLFLTFTVLVSFLLGFPFLFKSVEIYRSPLPFHDIDSLSNDVVSNPFLFPCHFQAILVPSD
PKSSSIDLNLDELELSIRSKITKLASKGIASQCGACTNNFTLSLTLDDGDCTQSSSKFYKCGAIRAVDLDFGDDESVDEALESAGLDSGGKVYSVVVVVN
GDGVDGVKVVVGKYRHAWIVGRDWGVEEVAERLAEIFVRVFVNGGREEGLIHGEFMPVGADGRIVLSFNLLNADPSDWTYDWDFRKIDETLLAPMIDALG
PIANISVESQVLYHTPKFSVSSWDEKLGGYIFSTKDLPFFVNSNEWHLDTSIAAGGRSKILQFVVYVPSAKECPLLLQLPNGEISKTNAFISPMWGGVMV
WNPQSCSRDSDSELLVRHIMSPEDLQKVFEVFVGQFRQLFGLKSGSLHVGAMGTYSLLASENGFTEWELDVLSRQHTCFNIHSSATTLGSLSKLVQSLPR
MIIMDEIGKQVKFSLEAAKFARVNASLGFYDASAVSSRQARSLAEDAFFHPSIMSVSYYSFEHCFAVYSPFFLPVSMLVLPAALREWRRYKQEKAKYLLW
KAKEKVAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07180 GPI transamidase component PIG... Potri.002G245000
[exp]
0 1
AT3G07180 GPI transamidase component PIG... Potri.002G244801
[exp]
2.00 0.9371
AT1G26650 unknown protein Potri.008G091500
[exp]
3.46 0.8616
AT5G49840 ATP-dependent Clp protease (.1... Potri.004G229400
[exp]
8.66 0.8842
AT3G42170 BED zinc finger ;hAT family di... Potri.011G125951
[exp]
8.66 0.8758
AT5G39710 EMB2745 EMBRYO DEFECTIVE 2745, Tetratr... Potri.009G105600
[exp]
9.16 0.8713
AT3G18680 Amino acid kinase family prote... Potri.007G110301
[exp]
9.21 0.8513
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.004G020300
[exp]
10.39 0.8788
AT4G35830 ACO1 aconitase 1 (.1.2) Potri.007G060900
[exp]
13.26 0.8233
AT4G01810 Sec23/Sec24 protein transport ... Potri.002G187100
[exp]
13.85 0.8668
Potri.019G094650
[exp]
16.06 0.8743

Potri.002G245000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.