Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25060 684 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 434 / 3e-144 MEF22 mitochondrial editing factor 22 (.1) AT4G33990 386 / 3e-124 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 383 / 2e-123 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 378 / 1e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 375 / 2e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 372 / 7e-120 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 369 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 367 / 1e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 371 / 4e-118 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152000 [exp] 414 / 5e-136 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G191000 [exp] 416 / 1e-135 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 408 / 1e-133 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 402 / 3e-130 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 384 / 3e-125 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 385 / 1e-123 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 380 / 1e-123 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 381 / 1e-122 AT3G22690 582 / 0.0 unknown protein Potri.016G128900 [exp] 375 / 6e-122 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038187 [exp] 783 / 0 AT3G25060 630 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025915 [exp] 778 / 0 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 421 / 1e-137 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 412 / 5e-134 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 404 / 2e-131 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10018492 [exp] 375 / 1e-122 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 375 / 1e-121 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 375 / 6e-121 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 371 / 1e-119 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037362 [exp] 370 / 1e-119 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G245200.1 pacid=42777803 polypeptide=Potri.002G245200.1.p locus=Potri.002G245200 ID=Potri.002G245200.1.v4.1 annot-version=v4.1 ATGCGGACACTTTCATGGCCAAAACGCCTAAAACATCTGCTTTTAGCATGCAAAGATGAAGCTCCCGTAACCCAAATCCACGCACTCATCATCACGACCG GTCTCTTCTTCGCCAATTCAAACTTCAATGGCCTCGTCATAGCTTCATATGCCCGCATTGGTGGCATCACGTCGGCCCGCCACCTATTTGACAAATTGCC TCAAAGAGGCGTAGACGCTTGGAATGCCATGATCGTTGCTTATTCTCGGAGATATCACTTGACTGAAGTCTTGAATCTTTACCATCAGATGGTAAATGAA GGAGGTAAACCCGATAGCTCCACTTTCACTGTAGCGATAAAGGCATCGTCAAGCTTAAAGGATTTGGAAGCTGGAGAGAGAATTTGGCGTCGAGCGGTGG ATTTTGGATATGGGTGTGATGTGTTTGTCGGGTCATCTGTTTTGAATTTGTATGTAAAGTGTGGAAAAATAGATGAGGCTAAGTTGGTGTTTGATAAGAT GGTGAAAAGAGATGTTGTTTGTTGGGCTACTATGATAACAGGACTTGTGCAGAACGGAAACGTGTTAGAGGCAGTTGATATGTTTCGAAGGATGCGAAAG GAGGGGATCGAAGGAGATGGAGTTCTGATGTTGGGATTAGTTCAGGCTTGTGCAAATCTTGGAGAGTTGAAGTTGGGTCTTTCAGTTCATGGGCATGCGG TTAGGAGAGAGATGCTTATGGATGATGTTATTCTTCAAACTAGCCTTGTTGACATGTATGCTAAGATTGGGGATTTGGAGCTTGCTTCTCGTGTTTTTGA GCAGATGCCCCGGAAGAATGCTGTTTCTTGGGGTGCATTGATTTCTGGCTTTGCTCAAAATGGTTTTGCAGAGTATGCACTTGATTTGTTGGTTGAGATG CAGAGTTTGGAATTCAAACCGGATACGGCGGTTCTTGTTAGCGCACTTTTGGCATGTTCACAAGTAGGGCATTTGAAACTAGGCAAGTCTATACACGGAT ATATTGTTAGGAGGCTTGGTTTTGAACTTGTTCTAGGCACCGCATTGATTGACATGTATGCAAAATGTGGATCACTTTCTTGTGCACATGCCATATTTGA TCGGGTGGATTCTAGGGACGTGATATTGTGGAATACAATGATCGCCAGCTATGGTATCCATGGAGATGGAAAGGAAGTTCTCTCTCTATTCCTAAAGATG AAAGAAGCAAACATAAGCCCTGATCATGCAACTTTTGCGTCTCTTCTCTCGGCTCTTAGTCACTCTGGACAAGTAGATGTAGGTCAATACTGGTTTAATG CCATGGTTAATGAATGTAAGATCCCACCAAGCGAGAAGCATTATGCTTGCATGGTTGATCTTTTGTCCCGAGCAGGACGAGTGGAAGAGGCTTATCAGCT AATAGAATCTATGAACACAGAACCAGGTTTAGCTATTTGGGTTGCCCTCCTGTCAGGTTGCCATAATTATAGGAACCTCTTATTTGGAGAAGTGGCAGCA AAGAAAATCCTTGATTTAAACCCAGATGATTTGGGAATTTATGCCTTGGTTTCAAACTTCTTTTCCTTGGCCAGGATGTGGGATAGAGTATCTATTTTAA GGAAGATTATGAAAGAAACAGGAATGAAGAAAGTTCCTGGTTACAGTGCGGTGGAAGTGAATGGAAAGCATGAAGCTTTTCTGGTGGAAGATAAGAACCA TCACCAGTACGAAGAAATCTTACAAATGTTGGATAGTTTGGATAATGAGATGAGAGTTATCAGACATGTCCCAGACAGTTTGCATGACGTTGAAGAAGTA GTGATTTGA
AA sequence Show only first row Show all	>Potri.002G245200.1 pacid=42777803 polypeptide=Potri.002G245200.1.p locus=Potri.002G245200 ID=Potri.002G245200.1.v4.1 annot-version=v4.1 MRTLSWPKRLKHLLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNE GGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRK EGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEM QSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKM KEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLLSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAA KKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQYEEILQMLDSLDNEMRVIRHVPDSLHDVEEV VI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	0	1
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	2.44	0.9259
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	3.74	0.9285
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	4.24	0.9112
					Potri.006G211800 [exp]	5.00	0.8934
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	5.38	0.8904
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	7.14	0.9171
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	8.66	0.8659
AT5G44230			Pentatricopeptide repeat (PPR)...		Potri.005G119000 [exp]	8.94	0.8967
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.010G035700 [exp]	10.58	0.9156
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	10.67	0.9143

Compare expression of checked genes

Potri.002G245200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.