Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07190 239 / 2e-80 B-cell receptor-associated protein 31-like (.1) AT5G48660 234 / 2e-78 B-cell receptor-associated protein 31-like (.1) AT5G42570 126 / 4e-36 B-cell receptor-associated 31-like (.1) AT1G11905 105 / 5e-28 B-cell receptor-associated protein 31-like (.1.2) AT3G20450 77 / 7e-18 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191500 [exp] 297 / 2e-103 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.004G007900 [exp] 129 / 5e-37 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.011G007200 [exp] 126 / 4e-36 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.011G089100 [exp] 97 / 2e-25 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 88 / 4e-21 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011842 [exp] 251 / 6e-85 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10022777 [exp] 238 / 1e-79 AT5G48660 271 / 9e-93 B-cell receptor-associated protein 31-like (.1) Lus10038188 [exp] 233 / 1e-77 AT3G07190 265 / 1e-90 B-cell receptor-associated protein 31-like (.1) Lus10031546 [exp] 125 / 2e-35 AT5G42570 287 / 3e-99 B-cell receptor-associated 31-like (.1) Lus10030043 [exp] 123 / 4e-35 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10035283 [exp] 115 / 7e-32 AT5G42570 244 / 9e-83 B-cell receptor-associated 31-like (.1) Lus10015132 [exp] 107 / 1e-28 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10020025 [exp] 104 / 1e-27 AT1G11905 225 / 9e-75 B-cell receptor-associated protein 31-like (.1.2) Lus10025914 [exp] 37 / 0.0007 AT3G07190 66 / 7e-15 B-cell receptor-associated protein 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05266 [poplar] [flax] DUF724 Protein of unknown function (DUF724) PF05529 [poplar] [flax] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.002G245300.1 pacid=42777583 polypeptide=Potri.002G245300.1.p locus=Potri.002G245300 ID=Potri.002G245300.1.v4.1 annot-version=v4.1 ATGATTCAGTTATTGTTCTTAGTTCTGTTTGTTGAGGGGGCTGTGGCTTTTTTGCTGTTGGTAAAGATTGGGCCACTGAGAGAGTTGGTGATAAAGAGTT TGGATCAGGTGAAGATGGGAAAGCGTCCGGCTACAGTGAAAACTATTGCTGGTACCATGTCTGTGATTCTGTTTTTTAGCCTCATGAACATTGTCAAGAT CCAAAATAAGGGCGCAAAGCTTGGTACAATGTCACCTATGGATCAGGTCCTATGGAGAACCCACTTGCTTGAGGCATCACTCATGGGTTTTACCCTGTTT CTTGGGTTCTTAATTGATCGGATGCACCATTATCTTTCGAAACTTATTGGGCTGAGGAGAAGTGTGGGATCTTCTAAAGAGGAAGTTGAAAGGCTTCAGA AAGAGAAAATGCAGCTTAAAGAGAAGGAAGACAAAGCTTCCATGGAAATAAAGCTTCTACTGGAACAAATTTCTACTCTATCAGAGAATTTGAAGAAGCT GAAGCTGGAATCTGAGAATAAGGACAAGCAGATTAAAACTGCTGAAGCACACGTTGTTTCCCTTCAGAAACAGTGTGCTGACCTATTGCTGGAATATGAT CGATTGTTAGAAGACAACCAAAATCTTCAGGCTCAAGCTACAGGACATAGGATTTGA
AA sequence Show only first row Show all	>Potri.002G245300.1 pacid=42777583 polypeptide=Potri.002G245300.1.p locus=Potri.002G245300 ID=Potri.002G245300.1.v4.1 annot-version=v4.1 MIQLLFLVLFVEGAVAFLLLVKIGPLRELVIKSLDQVKMGKRPATVKTIAGTMSVILFFSLMNIVKIQNKGAKLGTMSPMDQVLWRTHLLEASLMGFTLF LGFLIDRMHHYLSKLIGLRRSVGSSKEEVERLQKEKMQLKEKEDKASMEIKLLLEQISTLSENLKKLKLESENKDKQIKTAEAHVVSLQKQCADLLLEYD RLLEDNQNLQAQATGHRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07190			B-cell receptor-associated pro...		Potri.002G245300 [exp]	0	1
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	1.00	0.8828
AT3G25580			Thioredoxin superfamily protei...		Potri.001G297900 [exp]	3.16	0.8476
AT4G18800		AthSGBP, AtRab1...	RAB GTPase homolog A1D (.1)		Potri.004G061000 [exp]	6.00	0.8049
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	6.24	0.8391
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	13.41	0.7919
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	14.49	0.8113	CAP1.1
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	15.19	0.7828
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	16.00	0.7910
AT3G18800			unknown protein		Potri.019G006500 [exp]	22.24	0.8154
AT4G12540			unknown protein		Potri.013G040800 [exp]	26.03	0.8142

Compare expression of checked genes

Potri.002G245300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.