Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48655 155 / 2e-47 RING/U-box superfamily protein (.1.2.3) AT3G07200 124 / 8e-36 RING/U-box superfamily protein (.1.2) AT5G05130 52 / 7e-08 DNA/RNA helicase protein (.1) AT1G18660 50 / 3e-07 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G03510 49 / 5e-07 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G32950 49 / 9e-07 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G21070 49 / 1e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT4G27470 43 / 5e-05 ATRMA3 RING membrane-anchor 3 (.1) AT2G42030 43 / 7e-05 RING/U-box superfamily protein (.1) AT2G26350 43 / 9e-05 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191400 [exp] 297 / 2e-103 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G148300 [exp] 81 / 2e-18 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 73 / 2e-15 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.006G035700 [exp] 56 / 6e-09 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033800 [exp] 54 / 3e-08 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.012G068100 [exp] 52 / 6e-08 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.014G159300 [exp] 51 / 1e-07 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G358100 [exp] 46 / 1e-05 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.006G122800 [exp] 44 / 3e-05 AT5G03450 473 / 6e-160 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022774 [exp] 150 / 3e-45 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10022569 [exp] 80 / 2e-18 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10015722 [exp] 52 / 8e-08 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10018271 [exp] 50 / 8e-08 AT3G07200 51 / 2e-08 RING/U-box superfamily protein (.1.2) Lus10019075 [exp] 52 / 1e-07 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10039001 [exp] 51 / 2e-07 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10036151 [exp] 50 / 5e-07 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10039821 [exp] 46 / 7e-06 AT4G03510 154 / 2e-46 RING membrane-anchor 1 (.1.2) Lus10029990 [exp] 46 / 9e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 46 / 9e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G245500.3 pacid=42778653 polypeptide=Potri.002G245500.3.p locus=Potri.002G245500 ID=Potri.002G245500.3.v4.1 annot-version=v4.1 ATGAGCGGCCAGACTCAGGGCGTGAAGAGTCCTCCTTTAAGAGGATATCGGCGAAGGAAGACCGTGCTGGACTTAAACGTTCCTCCGATTGATGGAAGAG ATGACGAAGGGACTTCGACCACCCGCATTGAACCTCCTCAAGGAGTGCAAGCAAGCCACCAACGAAACGGACAAGGACCGTCTTTGCCGCCTCCTACTAT TGATGTTGATGCTATCGACGACGACGACGACGACGTCATCGAATCGTCGCCCAGAGCGTTTGCTCAGGCTAAGAACAATTCCCGGAGGGCTTTGGTCGTT GATGTAGAGTCAGGTGGGCGATTCACTCACAATAAGCGTAGAAGGGTTCCGCCGAATCAAACGATCATCAATTGTGATCTTTATATCAACTTGGAAGGCG GAAGTAGCAGCAGTAGCTCTAAGAGGGAGAATGTGCAGACCCTGCCGCCAAAGGAGCCAACCTTCAACTGCCCGATTTGCTTGTGTCCATTGGTCGAGGA GATGTCAACAAAATGCGGACACATTTTCTGTAAGGCTTGCATATCAGACGCAATCAAAAGACAGGCCAAATGCCCTACTTGTAGGAAAAGAGTCACTACT AAAGAGCTTATTAGAGTGTTCCTCCCAGCAACCAGTTGA
AA sequence Show only first row Show all	>Potri.002G245500.3 pacid=42778653 polypeptide=Potri.002G245500.3.p locus=Potri.002G245500 ID=Potri.002G245500.3.v4.1 annot-version=v4.1 MSGQTQGVKSPPLRGYRRRKTVLDLNVPPIDGRDDEGTSTTRIEPPQGVQASHQRNGQGPSLPPPTIDVDAIDDDDDDVIESSPRAFAQAKNNSRRALVV DVESGGRFTHNKRRRVPPNQTIINCDLYINLEGGSSSSSSKRENVQTLPPKEPTFNCPICLCPLVEEMSTKCGHIFCKACISDAIKRQAKCPTCRKRVTT KELIRVFLPATS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	0	1
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G316700 [exp]	2.00	0.7753
AT4G24380			unknown protein		Potri.002G102500 [exp]	2.64	0.7934
AT4G38040			Exostosin family protein (.1)		Potri.010G197900 [exp]	3.46	0.7465
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.010G107300 [exp]	6.92	0.7579
AT5G16940			carbon-sulfur lyases (.1.2)		Potri.017G132000 [exp]	8.94	0.7181
AT5G18150			Methyltransferase-related prot...		Potri.013G058200 [exp]	12.36	0.7033
AT3G03280			unknown protein		Potri.008G127200 [exp]	12.96	0.7232
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247400 [exp]	14.69	0.6773
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G099100 [exp]	15.00	0.7340
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	22.44	0.7154

Compare expression of checked genes

Potri.002G245500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.