Plant FIBer expression Database

Potri.002G245700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07210 603 / 0 unknown protein
AT5G26890 44 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025908
[exp]
699 / 0 AT3G07210 557 / 0.0 unknown protein
Lus10038194
[exp]
446 / 3e-153 AT3G07210 364 / 2e-121 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G245700.2 pacid=42780226 polypeptide=Potri.002G245700.2.p locus=Potri.002G245700 ID=Potri.002G245700.2.v4.1 annot-version=v4.1
ATGGGTGTTTTGAGTGAGTCATGGTGTTTTTGCAAAGGAGTAGGCAAGTCTGAGAAATTGAAGGCTGCCCTTTTTACTGGTAAGGGTCCTGCAATTGCCA
GGATATCCGCCACCGCCAATGGGATCTCCGGCACTGGATTCCTGATCCACCGGAATCTTCTTTTGACTGCTCATGTTAACATTCCCTCTATCGCTGCTGC
TGAAGGTTGCGAGATCCGCCTCCAAAATGGTGTAGCTGCCACTCTCGTCCCTCACAGGTTTTTCATTACCACCTCTGTTCTAGATCTAACTATAGTGGGT
TTGGATTCTGTGGATGGAGAATCAAATGCCCAAGGGCAGCAGCCACACTACTTGAAGACCTGTTCAAAACCAAATCTGGATTTGGGAAGTGCTGTTTACT
TTTTAGGCCATACAGATAATGAAGAACTGACAGTTGGTGAAGGAAAGGTGGTCATTGCCACGGACAATCTCATAAAACTGTCAACTGATGGAGTATCATG
GAGCCCTGGATCTGCTGGATTTGATGCACAAGGTAATCTTGCATTCATGATCTGTGATCCCATGAAACTTGCGACATCTCCAAATACTAAATCTTCTTCA
ACTTCATCATCATCCTCATCATCATGGAAGAAGGATTCTCCCATGCAATTCGGTATTCCTGTACCCATTATTTGTGATTGGTTGAACCAGCACTGGGAAG
GGAACCTTGATGAACTTACCAAACCCAAATTGCCGATAATTAGATTGATGTCCACGGGACAGAAAAGTGAGCATTCTTGTGCTTCCTTCACACTCCGGCA
GGTTTTTAAGTCGACAGAAGCTGATAACGATGGCACCCCATCATCGAATACAGTCTCAAAAGGTAAAGATCAACCAAATCCAGGTTGTTCTGGCACAGAA
AATACTGTCAAGGAAGGAATCCAAACTACTGATTCACATGGTGCCCATGTTCAAGGAATTCCAACCCCAGAAATATATGAATCACCTAAGCTGACTGCTG
GCCCTCTTAGGAAAAAGGAAAGCGCCCAAATACAGCTTTTGGATATTAATTTCCCTCCTAGGGTGACCAAAACTACAGTTCAACCACATCCAGACATACA
GCTGCTGCCAAACTCCGATGAGAATTCTGTCAAGGAAATGCCTTCACAGACTCCACTGAGTGAAGATCAAATCAAGTACAAGGGACATGCTATTCCTGAA
GGGGATGCTGACATTGCCTCAACAGGTTCTGTGAATGGAGCCCAAAGTGAGGTCCATTCTAGTTCTTCTCCAGTGGAGGTTTCAGAGATGTATAATGGAT
ACAGCAGTGAGGGAGAAACAACTATGTACTCTGCAGAAACTGCCGAGAGTCGAAACTATACAAGCCCAAGAGAGGGGAAGTTTCAGCAAGTTGGCCGGAG
CCACAGTTGTGTAAGTTATAATAGATGGGGAACTGCCCAAAGGAACCAGGTGGCCCGAAGGGCAATGCTAGAACAGCAGAGAAGCTTCATCCATGGAAGG
AAAATGCATTCACAAGGGGCAACTTCTCAAAGGAGTAATGACTACTTTAGCCCAACTGTGTCTTCTATAATGAAGAAGCGAAACAACTCAGAGCAGCCAA
CCAGACCGAAGCAAAGCGCGGTTCACTCCTCTCCGAGATGGATGTTCTGA
AA sequence
>Potri.002G245700.2 pacid=42780226 polypeptide=Potri.002G245700.2.p locus=Potri.002G245700 ID=Potri.002G245700.2.v4.1 annot-version=v4.1
MGVLSESWCFCKGVGKSEKLKAALFTGKGPAIARISATANGISGTGFLIHRNLLLTAHVNIPSIAAAEGCEIRLQNGVAATLVPHRFFITTSVLDLTIVG
LDSVDGESNAQGQQPHYLKTCSKPNLDLGSAVYFLGHTDNEELTVGEGKVVIATDNLIKLSTDGVSWSPGSAGFDAQGNLAFMICDPMKLATSPNTKSSS
TSSSSSSSWKKDSPMQFGIPVPIICDWLNQHWEGNLDELTKPKLPIIRLMSTGQKSEHSCASFTLRQVFKSTEADNDGTPSSNTVSKGKDQPNPGCSGTE
NTVKEGIQTTDSHGAHVQGIPTPEIYESPKLTAGPLRKKESAQIQLLDINFPPRVTKTTVQPHPDIQLLPNSDENSVKEMPSQTPLSEDQIKYKGHAIPE
GDADIASTGSVNGAQSEVHSSSSPVEVSEMYNGYSSEGETTMYSAETAESRNYTSPREGKFQQVGRSHSCVSYNRWGTAQRNQVARRAMLEQQRSFIHGR
KMHSQGATSQRSNDYFSPTVSSIMKKRNNSEQPTRPKQSAVHSSPRWMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07210 unknown protein Potri.002G245700
[exp]
0 1
AT1G13250 GATL3 galacturonosyltransferase-like... Potri.010G129400
[exp]
3.16 0.8610
AT3G16850 Pectin lyase-like superfamily ... Potri.010G005500
[exp]
6.48 0.8567
AT4G26690 GDPDL3, GPDL2, ... SHAVEN 3, MUTANT ROOT HAIR 5, ... Potri.001G360800
[exp]
7.34 0.8360
AT5G47780 GAUT4 galacturonosyltransferase 4 (.... Potri.016G001700
[exp]
13.85 0.8022
AT2G01210 Leucine-rich repeat protein ki... Potri.010G120100
[exp]
14.69 0.8365
AT1G53300 TTL1 tetratricopetide-repeat thiore... Potri.011G111500
[exp]
15.00 0.8489
AT1G12460 Leucine-rich repeat protein ki... Potri.003G117500
[exp]
15.49 0.7918
AT1G70280 NHL domain-containing protein ... Potri.010G094200
[exp]
17.54 0.8524
AT2G27810 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBA... Potri.009G148600
[exp]
18.70 0.7781
AT5G54380 THE1 THESEUS1, protein kinase famil... Potri.011G128000
[exp]
19.33 0.8010

Potri.002G245700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.