Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07260 249 / 6e-82 FHA SMAD/FHA domain-containing protein (.1) AT3G07220 246 / 8e-80 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234300 [exp] 44 / 0.0001 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038196 [exp] 288 / 1e-97 AT3G07260 248 / 2e-83 SMAD/FHA domain-containing protein (.1) Lus10038197 [exp] 94 / 5e-24 AT3G07220 99 / 1e-26 SMAD/FHA domain-containing protein (.1) Lus10028358 [exp] 42 / 0.0005 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.002G245900.1 pacid=42779864 polypeptide=Potri.002G245900.1.p locus=Potri.002G245900 ID=Potri.002G245900.1.v4.1 annot-version=v4.1 ATGGGAGCGACGGGAAGCGACGTAGAGGCCGGATTCGCGAAGCTACAAGGAGAAGACTTCGAGTACTATATGCAAACATACTCAATAATCTTAGGCCGGA ACTCGAAAAAATCCACCGTCGATGTCGACCTCTCAAGCCTTGGCGGTGGGATGAACATATCACGCCACCACGCGCGCATCTTCTACGATTTCACGCGACG CCGTTTCGCACTTGAAGTACTCGGCAAGAACGGTTGCCTAGTCGAAGGCGTACTCCACCTCCCAGGAAACCCTCCAGTCAAGTTGGATTCACAAGATCTG TTGCAAATCGGAGATAAAGAGTTTTACTTTTTGCTCCCTGTTAGGAGTATTTTGGGCGGGGCGTTAGCGCCTAGGCACCACGTGGCGGTTGTGCCGCAGT ATGGGTATCATTCCGGTGGGGCGGATAGGATGGTGGGACCGGTTTCGGTTGCGACGGTTAAGAAGGGGAGAGCGAGGGAGTTTTACGAGGAGGAGTTTGA TGATGAGGAGGATGTTGGTGGCAGTGGTGGTGGTGGGAAGAAGATGAGGAGAGAGGGTTATGAAGGGTATGGATATGGAAGTGGGTCTGGTGGTAAAGCA GGAATGGCTGGAGCTGTAGGAGAAAAGAAGATGGAGGGAAGATCAAGGATTGATCGCGAGTCTGACAATCAACAACTTCTGCAGTTAGAGGAAAAAGATG TAGTATCATCTGTTGCTACTGTGCTATCTGATCTTTGTGGTCCTGGAGAATGGATGCCCATGGAGAAACTTCATGCTGAGTTGGTCGAGCAATATAGCAG CATATGGCATCATTCTCGAGTAAGGAGATATCTCACATCTGAGGACTGGACGGGTCCTGAAGCCAAGGGCAAACCATGGTATGGCTTGCTTATGTTGCTA AGAAAATATCCAGAGCACTTTGTCATCAACACAAGGTCCAAAGGCCGGGTGACACTGGAGTTTGTCTCTCTTGTCTCTCTGCTTACATAA
AA sequence Show only first row Show all	>Potri.002G245900.1 pacid=42779864 polypeptide=Potri.002G245900.1.p locus=Potri.002G245900 ID=Potri.002G245900.1.v4.1 annot-version=v4.1 MGATGSDVEAGFAKLQGEDFEYYMQTYSIILGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFTRRRFALEVLGKNGCLVEGVLHLPGNPPVKLDSQDL LQIGDKEFYFLLPVRSILGGALAPRHHVAVVPQYGYHSGGADRMVGPVSVATVKKGRAREFYEEEFDDEEDVGGSGGGGKKMRREGYEGYGYGSGSGGKA GMAGAVGEKKMEGRSRIDRESDNQQLLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLHAELVEQYSSIWHHSRVRRYLTSEDWTGPEAKGKPWYGLLMLL RKYPEHFVINTRSKGRVTLEFVSLVSLLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Potri.002G245900 [exp]	0	1
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	1.00	0.7366	CXIP4.1
AT4G30820			cyclin-dependent kinase-activa...		Potri.018G103200 [exp]	1.41	0.7326
AT4G14965		ATMAPR4	membrane-associated progestero...		Potri.016G022700 [exp]	8.66	0.6319
AT5G59140			BTB/POZ domain-containing prot...		Potri.009G037800 [exp]	10.58	0.6607
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Potri.010G255000 [exp]	22.22	0.6043
ATCG00440		ATCG00440.1, ND...	NADH:ubiquinone/plastoquinone ...		Potri.013G163000 [exp]	30.78	0.7026
AT5G25360			unknown protein		Potri.006G254000 [exp]	34.29	0.5653
AT5G05800			unknown protein		Potri.004G135901 [exp]	34.92	0.6289
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.008G020400 [exp]	41.71	0.5865
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Potri.009G044500 [exp]	44.42	0.6328	ATPH1.1

Compare expression of checked genes

Potri.002G245900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.