Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25120 174 / 3e-55 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008094 [exp] 206 / 4e-68 AT3G25120 191 / 5e-62 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10013127 [exp] 197 / 2e-64 AT3G25120 186 / 4e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.002G246000.1 pacid=42778850 polypeptide=Potri.002G246000.1.p locus=Potri.002G246000 ID=Potri.002G246000.1.v4.1 annot-version=v4.1 ATGGGATCAAGCGGTATGAAACCTCTAGAAGAAAATGCCAAAGCGCCTCCGCCACCGCCTCCTTCTTCGTTTTCGGAGAATTGGAAGGAGCGGATACTCA TCCCCACACTTCTCGCAGGGATAACTGGTGGAGGAGTTGGGTTGGTGTCTAAGCATCGAAAAGTTCATGGGCTCGCTAACATTTCAACAACTTATGCCAC TAATTTTTCCATCGTCACCGGCTGCTATTGCGGGGCGCGTGAATTCGTAAGAGTAGTTCGAAAATCAGAACCAGATGATCTAGTAAACTCCGCGGTTGCA GGGTTTGGCAGTGGTGCTCTTCTTGGACGTCTTCAAGGGGGTCAGTTTGGTGCCTTTCGCTACTCGGTCATCTTTGCTGTTGTGGGCACAACGGTGGATT TTGCTACTATCAAACTAAGACCTGCATTGAGTAATTTTAAAGAATCTATATTCAAGGAAAAAGAGAAGAAACCTGGTTGGTTAAAGTTGCCAGAGTGGTC TCCCATACAAGTACTTGATGAGGAAGCGCTTGCTGCAAAAGAAGCTCGGGAAAAAGAACTCTATGCACGAAGTGCTCTTGGCAAACTTAGCAAGGAAGAA TCTTGA
AA sequence Show only first row Show all	>Potri.002G246000.1 pacid=42778850 polypeptide=Potri.002G246000.1.p locus=Potri.002G246000 ID=Potri.002G246000.1.v4.1 annot-version=v4.1 MGSSGMKPLEENAKAPPPPPPSSFSENWKERILIPTLLAGITGGGVGLVSKHRKVHGLANISTTYATNFSIVTGCYCGAREFVRVVRKSEPDDLVNSAVA GFGSGALLGRLQGGQFGAFRYSVIFAVVGTTVDFATIKLRPALSNFKESIFKEKEKKPGWLKLPEWSPIQVLDEEALAAKEAREKELYARSALGKLSKEE S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25120			Mitochondrial import inner mem...		Potri.002G246000 [exp]	0	1
AT3G29130			unknown protein		Potri.011G098200 [exp]	2.00	0.7647
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Potri.005G121700 [exp]	5.00	0.6831
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Potri.008G080700 [exp]	5.09	0.7687
AT5G05670			signal recognition particle bi...		Potri.002G020900 [exp]	5.74	0.7577
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	6.00	0.7494
AT5G63000			Mitochondrial import inner mem...		Potri.015G078600 [exp]	6.48	0.6973
AT4G14145			unknown protein		Potri.010G223700 [exp]	8.94	0.7098
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G018400 [exp]	13.26	0.7186
AT1G47310			unknown protein		Potri.014G036300 [exp]	20.49	0.6970
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G145516 [exp]	22.75	0.7220

Compare expression of checked genes

Potri.002G246000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.