Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 912 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 720 / 0 GAUT9 galacturonosyltransferase 9 (.1) AT3G61130 464 / 5e-157 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 448 / 1e-151 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 425 / 7e-142 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 397 / 6e-133 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 375 / 4e-124 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 355 / 1e-116 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT5G54690 330 / 1e-106 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G01040 328 / 8e-106 GAUT13 galacturonosyltransferase 13 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111000 [exp] 766 / 0 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 748 / 0 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 671 / 0 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G151400 [exp] 459 / 4e-155 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 454 / 5e-153 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 428 / 8e-143 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 416 / 1e-138 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 412 / 6e-138 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.019G108900 [exp] 390 / 5e-130 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011834 [exp] 910 / 0 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10003045 [exp] 694 / 0 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10022766 [exp] 579 / 0 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041389 [exp] 457 / 4e-155 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 457 / 2e-154 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 454 / 5e-152 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 434 / 1e-145 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10026546 [exp] 426 / 2e-137 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10018554 [exp] 403 / 7e-135 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013506 [exp] 386 / 2e-128 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.002G246500.1 pacid=42776869 polypeptide=Potri.002G246500.1.p locus=Potri.002G246500 ID=Potri.002G246500.1.v4.1 annot-version=v4.1 ATGGCGACTCATAGAAGCTCGCGCAGTGGAGTCGGCGTTTCGTTTCGGGTGTTGGGATCGGCTGTATCACTAGCAGTGTTTCTGTGCTTGACCGTATCTC TTCTCTTCACTGCTCACTCTCACTCTACCACCGACACCCATGGTTTCAGTAATGTGGGATACGGGTTGGGATCCGGCAGGAGATCCGTGCTGGCGATGAA ATCGGATCCGCTTAAGTCACGATTGGATCAGATCCGGAAGCAAGCGGATGATCACCGGTCGCTAGCGCATGCGTATGCATCGTATGCGCGGAAACTGAAG CTTGAGAATTCGAAGCTTGTTAGGGTTTTTGCTGATCTGTCGCGAAATTACACTGATCTTATTAACAAGCCATCGTATAGAGCTCTTTCCGAGTCGGATT CTCTGTCCATTGATGAGGCTACGCTTAGATTGTTCGAGAAGGAAGTGAAAGAGAGGATCAAAGTTACGAGGCAAGTGATTGCTGAAGCGAAAGAGAGTTT TGACAATCAGTTGAAGATTCAGAAGTTGAAGGATACTATTTTTGCGGTTAATGAGCAGTTAACCAAAGCGAAAAAGCAAGGGGCGTTTTCGAGTTTGATT GCTGCGAAATCGATACCTAAGAGTTTGCATTGCCTTGCGATGAGGTTGATGGAGGAGAGGATTGCTCATCCGGAGAAGTATAATGATGAAGGGAAGCCAC CCCTTCCGGAGTTGGAGGATCCGAAGCTTTATCATTATGCGATTTTCTCTGATAATGTGATTGCAGCGTCGGTGGTGGTGAATTCCGCGGTGAAGAATGC AAAAGAGCCATGGAAACATGTTTTTCATGTCGTGACTGATAAAATGAATCTCGGGGCAATGCAGGTTATGTTTAAATTAAAAGATTATAATGGGGCACAT ATAGAGGTGAAAGCTGTTGAGGATTATAAATTCTTGAATTCTTCATATGTGCCTGTACTTAAGCAATTGGAGTCGGCGAATCTGCAGAAGTTTTACTTTG AGAATAAGCTCGAGAATGCAACCAAGGATACTACAAATATGAAGTTTAGGAACCCCAAGTACTTGTCAATCTTGAATCACTTACGGTTCTATTTGCCGGA GATGTATCCAAAGTTGCATAGAATATTGTTTTTAGATGATGATATAGTGGTGCAAAAGGACTTGACCGGGTTATGGAAGATAGATATGGATGGGAAGGTG AATGGAGCTGTGGAGACCTGTTTCGGGTCATTTCATAGGTATGCTCAGTATATGAATTTCTCACACCCCTTGATCAAGGAGAAGTTTAACCCGAAGGCTT GTGCTTGGGCGTACGGCATGAACTTCTTTGATTTGGATGCTTGGAGGAGAGAGAAGTGCACGGAAGAGTATCATTATTGGCAGAACCTGAATGAGAACCG AACCTTGTGGAAATTGGGGACGCTGCCCCCGGGTTTAATCACATTTTACTCAACAACAAAGCCGCTAGACAAGTCATGGCATGTCCTGGGACTTGGGTAT AATCCTAGCATTAGTATGGACGAGATTCAGTCTGCCGCGGTGGTGCATTTCAATGGGAATATGAAGCCGTGGCTTGATATTGCAATGACCCAGTTTAAAC CCCTATGGACAAAGCATGTTGACTATGAGTTGGAGTTTGTCCAGGCCTGCAATTTTGGTCTCTAA
AA sequence Show only first row Show all	>Potri.002G246500.1 pacid=42776869 polypeptide=Potri.002G246500.1.p locus=Potri.002G246500 ID=Potri.002G246500.1.v4.1 annot-version=v4.1 MATHRSSRSGVGVSFRVLGSAVSLAVFLCLTVSLLFTAHSHSTTDTHGFSNVGYGLGSGRRSVLAMKSDPLKSRLDQIRKQADDHRSLAHAYASYARKLK LENSKLVRVFADLSRNYTDLINKPSYRALSESDSLSIDEATLRLFEKEVKERIKVTRQVIAEAKESFDNQLKIQKLKDTIFAVNEQLTKAKKQGAFSSLI AAKSIPKSLHCLAMRLMEERIAHPEKYNDEGKPPLPELEDPKLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKDYNGAH IEVKAVEDYKFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDIVVQKDLTGLWKIDMDGKV NGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACNFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	0	1
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.011G111500 [exp]	1.41	0.9197
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	3.46	0.9209
AT3G45230			hydroxyproline-rich glycoprote...		Potri.004G210300 [exp]	11.87	0.9059
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	15.09	0.8739
AT3G16200			unknown protein		Potri.001G186200 [exp]	15.55	0.8799
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	15.96	0.8757
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	17.49	0.8576
AT5G61240			Leucine-rich repeat (LRR) fami...		Potri.010G160700 [exp]	18.00	0.8936
AT5G26850			Uncharacterized protein (.1.2....		Potri.013G008500 [exp]	21.63	0.8768
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	22.27	0.9014

Compare expression of checked genes

Potri.002G246500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.