Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25150 374 / 5e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 259 / 1e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 242 / 3e-74 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 190 / 6e-55 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT1G69250 175 / 3e-49 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G13730 139 / 3e-36 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT3G07250 103 / 6e-23 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT5G43960 93 / 5e-20 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G55540 82 / 7e-17 nuclear transport factor 2 (NTF2) family protein (.1) AT1G27310 52 / 4e-08 NTF2A nuclear transport factor 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094600 [exp] 293 / 1e-93 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 221 / 3e-66 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.015G058700 [exp] 186 / 1e-52 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.002G257000 [exp] 183 / 7e-52 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 164 / 1e-44 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G157800 [exp] 153 / 1e-40 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.010G065500 [exp] 115 / 1e-27 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.003G170800 [exp] 58 / 3e-10 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2) Potri.001G057500 [exp] 57 / 9e-10 AT1G27970 228 / 4e-79 nuclear transport factor 2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022765 [exp] 445 / 1e-152 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10003144 [exp] 445 / 2e-152 AT3G25150 385 / 2e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 431 / 4e-144 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10037066 [exp] 155 / 2e-41 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10036918 [exp] 152 / 3e-40 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10026668 [exp] 147 / 2e-38 AT2G03640 255 / 5e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10004644 [exp] 146 / 3e-38 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022873 [exp] 124 / 2e-30 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10023722 [exp] 108 / 6e-25 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 103 / 2e-23 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [poplar] [flax] NTF2 PF02136 [poplar] [flax] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Potri.002G246600.14 pacid=42778740 polypeptide=Potri.002G246600.14.p locus=Potri.002G246600 ID=Potri.002G246600.14.v4.1 annot-version=v4.1 ATGGCAGCACCAGTGACGCAACTCCCAGTTCCAACTGCTGATGTTGTTGGTAATGCTTTCGCGCATCAGTACTACCATATATTGCAGCAATCCCCGGATC TTGTTCACCGATTCTACCAGGATGGTAGTAAGTTTGGACGTCCTGGAGAGGATGGGGTCATGAGTACCACTACTACCATGAATGCTATTAATGAGAAGAT ACTTTCACTTGGATATGGTCAAGTCAGGGCAGAAATTGTTACAGTTGATTCACAAGAATCTTACAAAGGTGGAGTTCTTGTGCTAGTGACTGGGTATTTG AATGGAAATGACAATTTGCGACAAAAATTTACTCAGAGCTTCTTCCTGGCTCCTCAAGACAAAGGTTATTTTGTGCTGAATGATGTGTTTCGGTATGTTG ATGACTCCACACACCAGAATGGAAATCAAGAGCCTGCCAGCAATTTTGAAGCCCCAGTTGCTCCTGACCAGGATACTCCTCACACACAGGAAACTCACAT TTCTGAGCCAACAGCTGCTTTGTCTGAGGAAGTCATTGGAGGGGAAGTGTACAATCCCTCTGAAAGTGGGGATGTTTCAGTTGAGGTAGAGGAAGAGGAA AGTGGGGATGTTTCATTTGAGGAAGAGGAAGAACCAATGCCTGAGGTTGTTGATGAAATTCCTCCTGATTCCCAGTTAGTGGCTGACTCCCAGGTTGTGG TCGAGTCTAGTGCTAAGATTGAAGACACTCCGAAGAAGTCGTATGCCTCCGTTGTGAAAGTTCAGAAGGAGTACACTGCACCTTTTTCGAGTCCTACCCC TTCTCCTCTGAGGTCTGCACCAAAAATCCAAGAACAAGTGACTGCTGCAGTGTCTCAACCCCCAGCAGCTGAGTCACATGTCTCCAGCTCTAATACTTTT GAAAATGGGAATGCCCAAGAGAGTGAAGAGGGTCCTTCTATCTACGTGAAAGGTCTGCCTTTAGATGCGACGACTACCTTGCTTGAAAACGAGTTCAAGA AGTTTGGACCTATTAGGAATGGTGGCGTTCAAGTTAGATTCCAAAAGGGATTTTGTTTTGGCTTTGTGGAGTTTGAGGTGGCGAGTGCTGTGCAAAGTGC ATTAGAGGCTTCACCTGTTATGATTAATGGATTCCGCGTCATTGTTGAGGAAAAGAGATCTACTTCCCGAGGGAACAATAGGGGACGATTTCCATCTGGA TCAGGGGCTGGATATAAAAGTGAAGGAATGAGAGGGCGTGGTAATCTTGGAGGAAAAGTATATGGCAGGATTGAAATTGGTATCAGAACAGAGTTTGGAA ACAGAGGTGGCAGTCGAGGCGGTGGATATTCAAACCGTGGAGGCGATGGATATTCAAACCGTGGAGGTGGAGGTGGAGGTGGAGGTGATGGGTATTCTAA CCGTGGAGGTGGAGGTGGAGGTGATGGGTATTCTAACCGTGGAGGTGGAGGTGATGGCTATCGGAGAGCTGATAAGATGGGGAACAATGGTGGTCGGGCA AACCGTTCTGGTGGTTTAGGTCTTAACGGCACAGCCAAGACTACAGCGCCACGAGTATCTGCAACAGCTTGA
AA sequence Show only first row Show all	>Potri.002G246600.14 pacid=42778740 polypeptide=Potri.002G246600.14.p locus=Potri.002G246600 ID=Potri.002G246600.14.v4.1 annot-version=v4.1 MAAPVTQLPVPTADVVGNAFAHQYYHILQQSPDLVHRFYQDGSKFGRPGEDGVMSTTTTMNAINEKILSLGYGQVRAEIVTVDSQESYKGGVLVLVTGYL NGNDNLRQKFTQSFFLAPQDKGYFVLNDVFRYVDDSTHQNGNQEPASNFEAPVAPDQDTPHTQETHISEPTAALSEEVIGGEVYNPSESGDVSVEVEEEE SGDVSFEEEEEPMPEVVDEIPPDSQLVADSQVVVESSAKIEDTPKKSYASVVKVQKEYTAPFSSPTPSPLRSAPKIQEQVTAAVSQPPAAESHVSSSNTF ENGNAQESEEGPSIYVKGLPLDATTTLLENEFKKFGPIRNGGVQVRFQKGFCFGFVEFEVASAVQSALEASPVMINGFRVIVEEKRSTSRGNNRGRFPSG SGAGYKSEGMRGRGNLGGKVYGRIEIGIRTEFGNRGGSRGGGYSNRGGDGYSNRGGGGGGGGDGYSNRGGGGGGDGYSNRGGGGDGYRRADKMGNNGGRA NRSGGLGLNGTAKTTAPRVSATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	0	1
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	2.82	0.8903
					Potri.005G152000 [exp]	3.00	0.9054
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	4.58	0.8267
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	6.32	0.8772
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.015G136900 [exp]	8.48	0.8356
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	11.48	0.8692
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	13.41	0.8602
					Potri.014G093150 [exp]	20.00	0.8697
					Potri.010G122150 [exp]	20.49	0.8467
AT1G16900			Alg9-like mannosyltransferase ...		Potri.001G392050 [exp]	20.49	0.7737

Compare expression of checked genes

Potri.002G246600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.