Plant FIBer expression Database

Potri.002G247100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07270 550 / 0 GTP cyclohydrolase I (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G195000
[exp]
771 / 0 AT3G07270 590 / 0.0 GTP cyclohydrolase I (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003152
[exp]
627 / 0 AT3G07270 579 / 0.0 GTP cyclohydrolase I (.1.2)
Lus10002353
[exp]
610 / 0 AT3G07270 567 / 0.0 GTP cyclohydrolase I (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0334 THBO-biosyn PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Representative CDS sequence
>Potri.002G247100.2 pacid=42776914 polypeptide=Potri.002G247100.2.p locus=Potri.002G247100 ID=Potri.002G247100.2.v4.1 annot-version=v4.1
ATGGGCGCTTTGGATGAGGAACATTTTAATAAAGAGATTGAGAATGGAGTGGAACTTGATTGCCTTGATCTGGGATTTGAGGACCAACTGGAGACTGTAG
CTATCGAGGATGCTGTGAAAGTTCTTTTGCAAGGTCTTGGCGAGGACATTAATAGAGAAGGCCTTAAAAAGACCCCGCTTCGCGTTGCCAAGGCGCTTCG
AGAAGGAACCAAAGGCTATAAACAAAAGGCAAAGGACATTGTTCAAAGTGCATTGTTTCCAGAAGTTGGTTTGGATGATGCAGTTGGTCATGCAGGCGGA
GCAGGCGGGCTTGTGATTGTTCGGGATCTTGACCTGTTTTCATACTGTGAATCTTGCTTGCTTCCTTTCCAGGTTAAGTGTCAAATAGGTTATGTCCCAT
CTGGTCAGAGGGTTGTAGGATTAAGCAAGCTCTCAAGAGTTGCTGATGTGTTTGCCAAAAGACTCCAAGACCCACAGCGTTTGGCAGATGAAATCTGCTC
AGCTCTGCATCTTGGTATCAAGCCAGCCGGTGTTGCCGTCATACTCCAATGTTCACATATTCATTTCCCAAATATAGAGCCACCTTTCCTTGACTCCAAT
CTCCAAGGTTGGGTTAAGGCATTGGTCCATTCAGGTTCAGGTGTTTTTGAAAATGATTTTGCTGATGTTTGGGATGATTTTTTTAGTCTACTGAAGTTCA
GAGGAATAAATGTGGATAAAACTCTGATGAAAGACTCAAAGCAGCAGTGTTGGTGTCCGTCCCAATATTCCTCGAGTGCTGAAGTTACCGGACAACCCAA
CACAGGAATGGTTACAGCAGTTACTTCAATCCTCATCTCTTTGGGTGAAAACCCATTACGGAAAGAGCTTGCTGGAACTCCTAGTCATTTTGTCAAGTGG
TTGATGAATTTCCAAAACGCAAATCTAGAAACGAAACTGAATGGCTTTGCTTGTGGCAGGATGGATCCTCTTAAACAAAATGGGGAAGTCAGCCATGATA
AACGGATGTATACCGAGCTGAATCTGTCATTTTGTTCCCAGTGTGAGCATCATTTACTTCCCTTTTATGGTGTTGTGCATATTGGGTACTATGCTGAAGA
AATCACCCCTGTCATTAAATCTCGTTTACAGTCGATAGTACGTTTTTATGGTTTCAAGCTCCAAGTACAGGAAAGACTTACCAGGCAGATTGCCGAGACT
GCTTCATCCTTATTAGGTGGAGATGTGGTGGTCGTTGTGGAGGCTAACCATACTTGTATGATTTCTAGAGGTATTGAGAAATTTGGAAGTAGTACAGCTA
CAATTGCTGTGCTTGGTCTATTTTCAACCGACCCCGCTGCAAGGGCCAAGTTTTTGCAGAACATTCCAAATCCTGCTTCAGGAGGATCAGGATTCTAA
AA sequence
>Potri.002G247100.2 pacid=42776914 polypeptide=Potri.002G247100.2.p locus=Potri.002G247100 ID=Potri.002G247100.2.v4.1 annot-version=v4.1
MGALDEEHFNKEIENGVELDCLDLGFEDQLETVAIEDAVKVLLQGLGEDINREGLKKTPLRVAKALREGTKGYKQKAKDIVQSALFPEVGLDDAVGHAGG
AGGLVIVRDLDLFSYCESCLLPFQVKCQIGYVPSGQRVVGLSKLSRVADVFAKRLQDPQRLADEICSALHLGIKPAGVAVILQCSHIHFPNIEPPFLDSN
LQGWVKALVHSGSGVFENDFADVWDDFFSLLKFRGINVDKTLMKDSKQQCWCPSQYSSSAEVTGQPNTGMVTAVTSILISLGENPLRKELAGTPSHFVKW
LMNFQNANLETKLNGFACGRMDPLKQNGEVSHDKRMYTELNLSFCSQCEHHLLPFYGVVHIGYYAEEITPVIKSRLQSIVRFYGFKLQVQERLTRQIAET
ASSLLGGDVVVVVEANHTCMISRGIEKFGSSTATIAVLGLFSTDPAARAKFLQNIPNPASGGSGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07270 GTP cyclohydrolase I (.1.2) Potri.002G247100
[exp]
0 1
AT5G57490 VDAC4, ATVDAC4 ARABIDOPSIS THALIANA VOLTAGE D... Potri.018G093900
[exp]
1.41 0.8464
AT3G02750 Protein phosphatase 2C family ... Potri.019G054200
[exp]
2.64 0.8589
AT2G36290 alpha/beta-Hydrolases superfam... Potri.008G021400
[exp]
21.90 0.8092
AT3G47570 Leucine-rich repeat protein ki... Potri.017G145200
[exp]
23.04 0.8154
AT4G17970 ATALMT12, ALMT1... "aluminum-activated, malate tr... Potri.001G144300
[exp]
32.37 0.8124
AT1G80780 Polynucleotidyl transferase, r... Potri.003G181100
[exp]
52.44 0.6893
AT2G28260 ATCNGC15 cyclic nucleotide-gated channe... Potri.009G010700
[exp]
55.59 0.8014 CNGC15.1
AT3G47570 Leucine-rich repeat protein ki... Potri.017G151400
[exp]
66.22 0.7935
AT2G29100 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, gluta... Potri.004G052400
[exp]
88.79 0.7830
AT2G30300 Major facilitator superfamily ... Potri.013G154000
[exp]
90.70 0.7745

Potri.002G247100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.