Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MHK.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13020 630 / 0 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT4G19110 396 / 5e-135 Protein kinase superfamily protein (.1.2.3) AT5G45430 390 / 2e-132 Protein kinase superfamily protein (.1.2) AT3G48750 202 / 7e-62 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT5G63370 205 / 6e-61 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT4G11330 202 / 1e-60 ATMPK5 MAP kinase 5 (.1) AT4G01370 198 / 4e-59 ATMPK4 MAP kinase 4 (.1) AT1G66750 197 / 5e-59 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G01560 193 / 2e-57 ATMPK11 MAP kinase 11 (.1.2) AT3G45640 193 / 2e-57 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101600 [exp] 397 / 1e-135 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 374 / 8e-128 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 372 / 6e-127 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 361 / 1e-121 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.001G035400 [exp] 251 / 8e-82 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.015G092100 [exp] 214 / 2e-62 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G133500 [exp] 202 / 7e-62 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.009G066100 [exp] 201 / 2e-60 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.012G094600 [exp] 207 / 3e-60 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003155 [exp] 702 / 0 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10008303 [exp] 392 / 1e-132 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 390 / 5e-132 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 373 / 6e-125 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036384 [exp] 206 / 3e-62 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 204 / 3e-61 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 202 / 9e-61 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 201 / 4e-60 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10036136 [exp] 197 / 7e-59 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10024668 [exp] 196 / 2e-58 AT4G01370 657 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G247500.1 pacid=42780187 polypeptide=Potri.002G247500.1.p locus=Potri.002G247500 ID=Potri.002G247500.1.v4.1 annot-version=v4.1 ATGGAAAGGTATAAAATTTTGGAAGAGATTGGTGATGGTACTTGTGGTTGTGTATTTAAGGCCGTCAATATTGAAACATATGAAATTGTTGCTGTGAAGA AAATGAAGAGAAAGTTCTATTTCTGGGAAGACTGCATGAATTTACGAGAAGTAAAGGCCCTCCATAAATTGAATCATCCCAATATTGTAAAGTTGAAAGA AGTTGTCAGGGAAAACAGTGAACTATTTTTCATTTTTGAATACATGGAATACAATCTGTACCAATTAATGAGAGAGAAGCAGAGATCGTTTTCAGAGGAA GAGATACGGAACTTTATGTCTCAGGTGCTTCAAGGACTTGCTCACATGCATAGAAACGGATATTTTCATCGGGATTTGAAACCTGAGAATGTGCTTGTGA CAAAGGATGTTCTTAAAATTGCCGACTTTGGACTGGCTAGAGAAGTTTCGTCAGCACCCCCTTACACTGAATATGTTTCCACACGGTGGTACCGAGCTCC AGAGGTTTTGTTGCAGTCCTCAACATATACTCCTGCAATTGATATGTGGGCAGTTGGTGCAATAATAGCTGAGCTTTTCACTCTGTCCCCAATTTTCCCT GGTGAAAGTGAAATAGATCAGTTGTACAAGATATGCTGTGTTCTTGGTACCCCAGAGTTGACTGCATTCCCTAAAGCTACAAATGTCTCTCAACTGATGA ACCTTAGTTGTGCAGATATGTTACCTGCCAACCTATCTGATATCATTCCCAATGCTAGCTTGGAAGCTATTGATTTGATTATGCAATTGTGTTCGTGGGA TCCACTAAAGAGGCCAACTGCTGATCAGTCACTGCAACATCCATTTTTCCATGTGGGTATGTGGGTTCCTTATCCACTTCGAGATCCTCTTGAGCTGAAG CTAAATAACAAGGGACCAAAGCCAAATCTTGAGTTAAATCTATGGGATTTTGGTGCTGAACCTGATGACTGTTTTCTTGGATTGACACTCGCTGTAAAGC CCAGTGTTTCAAACTTGGGAGACTTATTTCATGCAGAGGCAGTCCGGAATGTTCCTCAAGGCATGCGGGAGGATTTTGTGTTTTGCTCTGATTTAAAAGG TCGCCAAGAACAGTCAGTTTTTTGGTCGCTGCTATCTCCTGATCAAAATGGAATCCACCCTCCAGTTGAATCATCGCTATCATTATCATTTAGTTCGATT CAGCATCCATCGGTTGGAGTTCCACAATCATCTGGGTTCACAATTACATCACTACAGCCTAACTTCTTAGATTGTCCGTTAATGGCCATGTCCTCCCCAC TTCAACAAAGTCATTACCTGTGA
AA sequence Show only first row Show all	>Potri.002G247500.1 pacid=42780187 polypeptide=Potri.002G247500.1.p locus=Potri.002G247500 ID=Potri.002G247500.1.v4.1 annot-version=v4.1 MERYKILEEIGDGTCGCVFKAVNIETYEIVAVKKMKRKFYFWEDCMNLREVKALHKLNHPNIVKLKEVVRENSELFFIFEYMEYNLYQLMREKQRSFSEE EIRNFMSQVLQGLAHMHRNGYFHRDLKPENVLVTKDVLKIADFGLAREVSSAPPYTEYVSTRWYRAPEVLLQSSTYTPAIDMWAVGAIIAELFTLSPIFP GESEIDQLYKICCVLGTPELTAFPKATNVSQLMNLSCADMLPANLSDIIPNASLEAIDLIMQLCSWDPLKRPTADQSLQHPFFHVGMWVPYPLRDPLELK LNNKGPKPNLELNLWDFGAEPDDCFLGLTLAVKPSVSNLGDLFHAEAVRNVPQGMREDFVFCSDLKGRQEQSVFWSLLSPDQNGIHPPVESSLSLSFSSI QHPSVGVPQSSGFTITSLQPNFLDCPLMAMSSPLQQSHYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13020		MHK	Protein kinase superfamily pro...		Potri.002G247500 [exp]	0	1	MHK.1
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	1.73	0.8310
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	9.21	0.7987
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	10.67	0.8244
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	11.40	0.7782
AT3G03560			unknown protein		Potri.013G073400 [exp]	11.74	0.7965
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	13.85	0.8085
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Potri.013G046900 [exp]	15.42	0.7913
AT1G24310			unknown protein		Potri.008G176100 [exp]	16.24	0.8084
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	20.24	0.7837
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009900 [exp]	21.56	0.7168

Compare expression of checked genes

Potri.002G247500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.