Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SGGN1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07320 653 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G14080 540 / 0 MEE48 maternal effect embryo arrest 48, O-Glycosyl hydrolases family 17 protein (.1) AT3G23770 528 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 375 / 1e-126 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 357 / 2e-119 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 353 / 1e-117 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 315 / 3e-102 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 311 / 2e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 310 / 2e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 295 / 4e-95 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247800 [exp] 756 / 0 AT3G07320 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G321900 [exp] 566 / 0 AT3G23770 620 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G060300 [exp] 557 / 0 AT3G23770 599 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 380 / 3e-128 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 351 / 4e-117 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 345 / 1e-114 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 317 / 6e-104 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.018G068600 [exp] 316 / 5e-103 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 308 / 1e-99 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038211 [exp] 695 / 0 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10025892 [exp] 614 / 0 AT3G07320 545 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10008881 [exp] 550 / 0 AT3G23770 579 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023226 [exp] 541 / 0 AT3G23770 572 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 372 / 3e-125 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 371 / 7e-125 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 370 / 2e-124 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 365 / 1e-122 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 341 / 6e-113 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10016539 [exp] 296 / 3e-95 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.002G247900.1 pacid=42777359 polypeptide=Potri.002G247900.1.p locus=Potri.002G247900 ID=Potri.002G247900.1.v4.1 annot-version=v4.1 ATGATGGGGTTAGGTTTTGTCCCCATCTTCAGTCTCGCTCTCTTAGTTTCCATTTCAAGTGCAGAGATCTCTAACAAGGTGGGCATAAACTACGGTCAGC TAGGAAACAATCTCCCATCTCCTTCAGAGTCAGTGGAGCTACTCAAATCTCTCAAAGCCAAACGAGTCAAGATCTATGATGCCAATCCAGACATCCTTAA ATCCCTCAAAGACACCGACATCCAAGTTTCCATTATGATCCCTAACGAACTCATACAAAACATCTCCAAAAGCCAATCTCTCTCGGACCACTGGGTTAAA ACCAATGTCGTCCCTTACTACTCCGATGTCAAAATCCGATATCTCCTCGTCGGGAACGAAATCCTCACAAATCCTGACACGGGCACATGGTTCAACCTTG TACCTGCCATGCGCCGAATCAAAGCTTCCTTAAAAACCCACAAGATCACAAAAATCAAAGTCGGCACCCCGTCTGCCTTAAACGTTCTCGAGTCTTCATT CCCACCATCGAATGGCACGTTCCGGTCCGATATCTCCGGCCCGATAATTAAACCGATGTTGCGATTCTTGGACCGGACCAAATCGTTCTTTTTCATCGAT GTCTACCCTTATTTCGCCTGGGCCGATAACCACCAAAACATCAATTTAGACTACGCTCTTTTCAAAGCCAAGAACGTAACATACACCGACCCGGGTACAA ACTTAACCTACACCAACCTCTTAGACCAGATGTTAGACGCTGTCGCTTTTGCGATGAAACGGCTCGGGTATCCGGACGTTCGTATTTTTATTGCAGAAAC GGGTTGGCCTAACGATGGAGATATTGACCAAATCGGAGCAAATATTTACAACTCAGCCACTTTCAATCGCAATGTGATAAAAAAACTCACAACAAAACCC GCAATTGGAACCCCAGCCCGACCCGGTTGGGTCATACCCAGTATCATCTTCGCCCTGTATAACGAGAACCAGAAACCGGGTCCGGGTACGGAGCGACATT TCGGATTATTGTACCCAAATGGGACCAAAATCTACGAGATTGATCTCAGTGGAGACACGCCGTTATCAGAGTACACAAAGCCCTTGCCGGCTCCGACCAA TAACGAGCCATATAAAGGGAAGATATGGTGCATGGTTGCTAAAGGAGTCAACGAGACTGCAGTGGGAGATGCGTTATCATATGCTTGCTCGCAGGGGAAT AAAACTTGTGACGCGATCCAGACCGGAAAGGAGTGTTATAAGCCGGATTCGTTGTTTTGGCATGCGAGTTATGCGTTTAGTTCGTATTGGGCCCAGTTTA AGAAAAGTGGTGGGACCTGCTCCTTCAACGGGTTAGCTACGATGACGCCTAAGGATCCAAGTTTTGGACATTGCAAGTTCCCAGGTACAACTCTTTGA
AA sequence Show only first row Show all	>Potri.002G247900.1 pacid=42777359 polypeptide=Potri.002G247900.1.p locus=Potri.002G247900 ID=Potri.002G247900.1.v4.1 annot-version=v4.1 MMGLGFVPIFSLALLVSISSAEISNKVGINYGQLGNNLPSPSESVELLKSLKAKRVKIYDANPDILKSLKDTDIQVSIMIPNELIQNISKSQSLSDHWVK TNVVPYYSDVKIRYLLVGNEILTNPDTGTWFNLVPAMRRIKASLKTHKITKIKVGTPSALNVLESSFPPSNGTFRSDISGPIIKPMLRFLDRTKSFFFID VYPYFAWADNHQNINLDYALFKAKNVTYTDPGTNLTYTNLLDQMLDAVAFAMKRLGYPDVRIFIAETGWPNDGDIDQIGANIYNSATFNRNVIKKLTTKP AIGTPARPGWVIPSIIFALYNENQKPGPGTERHFGLLYPNGTKIYEIDLSGDTPLSEYTKPLPAPTNNEPYKGKIWCMVAKGVNETAVGDALSYACSQGN KTCDAIQTGKECYKPDSLFWHASYAFSSYWAQFKKSGGTCSFNGLATMTPKDPSFGHCKFPGTTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247900 [exp]	0	1	SGGN1.2
					Potri.005G161100 [exp]	9.16	0.7659	AGP5.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150050 [exp]	11.31	0.8314
AT3G18670			Ankyrin repeat family protein ...		Potri.006G062900 [exp]	14.42	0.8226
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.017G063500 [exp]	16.12	0.6918
AT5G60760			P-loop containing nucleoside t...		Potri.004G213500 [exp]	16.97	0.7115
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	18.16	0.6743
AT2G24130			Leucine-rich receptor-like pro...		Potri.005G030519 [exp]	19.36	0.8162
AT2G44260			Plant protein of unknown funct...		Potri.018G087400 [exp]	32.43	0.7945
AT5G66580			unknown protein		Potri.004G149800 [exp]	33.76	0.7565
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	35.28	0.7808

Compare expression of checked genes

Potri.002G247900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.