Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27800 217 / 3e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G36240 121 / 4e-30 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G02150 114 / 2e-27 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 112 / 1e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 110 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 109 / 6e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 109 / 6e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G46100 108 / 7e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 109 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093700 [exp] 211 / 3e-64 AT2G27800 483 / 1e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 137 / 4e-36 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G056400 [exp] 126 / 2e-31 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 124 / 4e-31 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G103600 [exp] 120 / 6e-30 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 119 / 1e-29 AT4G01400 576 / 0.0 unknown protein Potri.005G046000 [exp] 118 / 1e-28 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G047000 [exp] 115 / 6e-28 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 115 / 7e-28 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025890 [exp] 476 / 4e-169 AT3G25210 430 / 6e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038215 [exp] 389 / 4e-133 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011029 [exp] 216 / 8e-67 AT2G27800 430 / 1e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038214 [exp] 140 / 2e-40 AT3G25210 119 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015397 [exp] 134 / 6e-35 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017658 [exp] 121 / 1e-29 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 120 / 2e-29 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 115 / 2e-27 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 114 / 3e-27 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10009548 [exp] 112 / 4e-27 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G248100.1 pacid=42776852 polypeptide=Potri.002G248100.1.p locus=Potri.002G248100 ID=Potri.002G248100.1.v4.1 annot-version=v4.1 ATGCCTCCTGTGAGCTTAAATCGCCTCCTCTACTCCACTCTCAAGAAACCCAGACTTGTCTTCTCTCCACTCTCACCTCCATCCACTCTTCAAATCACCG ACCCTTCACTCTATCACCGGCACCGCCCATTCTCCGAAAACCCCCAATCCCAAACGCCCGAAATCCCATTTCTCAAAACTCCAACTCGAACCCCACTCGA AACCCAATTCGAAACATGGACCCAAAACCTCAAGCCGGGTTTCACCCCAACCGATGTCGATACAGCCATCCGGGCCCAGTCCGACCCGGATCTCGCTCTC GACATCTTCCGTTGGACGGCGCAGCAACGTAATTACAAGCACAATCACATCACCTACCTGACCGTGATCAAAATCCTGATCAGCGGCAGGCGATACCGCC AGGCAGAGACTCTAATCGAAGAGGTGATTGCTGGTGCTTGCGAGATTAGTGTTCCTCTCTATAATTCGATGATTCGCTTCTGCTGTGGCCGTAAGTTGTT GTTTAATCGCGCCTTTGATATCTATAAGAAAATGTTGAAATCGGAGGATTGTAAGCCCACATTGGATACCTACACGTTGTTGTTTAATTCATTGCTTAGG AGATTCAATAAGTTGAATGTTTGTTATGTGTATTTGCATGCGGTGAAATCGTTGACGAAGCAAATGAAGGCGTCAGGAGTGATACCGGATACTTTTGTTC TAAATATGATCATCAAAGCTTATGCTAAGTGTTTGGAAGTAGATGAGGCTGTGAGGGTTTTTCGCGAAATGGGGTTGTATGGTTGTGAGGCTAATGCTTA TAGCTATAGTTATTTAGTAAAGGGACTGTGTGGAAAGGGGAGAAGTGGGCAGGGTTTAGGGTTTTACAAGGAAATGAAGGGTAAGGGGTTGGTGCCCAGC GGGAGTACTTATATGATTTTGATCTGTAGTCTTGGGATGGAGCGGAGGTTCGAGGAAGCAATTGGGGTTGTGTTTGACATGTTGGGGGATTCAATGTCGC CTGATCTGTTGACTTATAGGACGGTGTTGGAAGGGTTGTGTAGGGAGGGAATGGTTGATAAGGCTTTTGAGTTATTAGAGGAGTGGAGGAAGAAGGATGG ATTCATGGGTGAGAAGAATTATAAGAGTTTGTTAAATGGATTGCATTTTGTAAGTCGGCAGTAG
AA sequence Show only first row Show all	>Potri.002G248100.1 pacid=42776852 polypeptide=Potri.002G248100.1.p locus=Potri.002G248100 ID=Potri.002G248100.1.v4.1 annot-version=v4.1 MPPVSLNRLLYSTLKKPRLVFSPLSPPSTLQITDPSLYHRHRPFSENPQSQTPEIPFLKTPTRTPLETQFETWTQNLKPGFTPTDVDTAIRAQSDPDLAL DIFRWTAQQRNYKHNHITYLTVIKILISGRRYRQAETLIEEVIAGACEISVPLYNSMIRFCCGRKLLFNRAFDIYKKMLKSEDCKPTLDTYTLLFNSLLR RFNKLNVCYVYLHAVKSLTKQMKASGVIPDTFVLNMIIKAYAKCLEVDEAVRVFREMGLYGCEANAYSYSYLVKGLCGKGRSGQGLGFYKEMKGKGLVPS GSTYMILICSLGMERRFEEAIGVVFDMLGDSMSPDLLTYRTVLEGLCREGMVDKAFELLEEWRKKDGFMGEKNYKSLLNGLHFVSRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25210			Tetratricopeptide repeat (TPR)...		Potri.002G248100 [exp]	0	1
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	3.31	0.8372
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	7.07	0.8346
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.001G293900 [exp]	8.71	0.8300
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Potri.015G100400 [exp]	9.00	0.8223
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.005G192900 [exp]	10.29	0.7560	GBF4.2
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	10.72	0.8268
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.001G269200 [exp]	12.24	0.8265
					Potri.002G208200 [exp]	13.85	0.8341
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	17.54	0.8166
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	22.75	0.8264

Compare expression of checked genes

Potri.002G248100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.