Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25230 857 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 822 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G54010 200 / 3e-56 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 137 / 6e-38 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 125 / 2e-31 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 108 / 3e-27 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 100 / 1e-24 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G55520 91 / 6e-21 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 83 / 1e-16 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G64350 74 / 1e-15 FKP12, ATFKBP12, FKBP12 ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FK506-binding protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149400 [exp] 823 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 580 / 0 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 564 / 0 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G105100 [exp] 199 / 4e-56 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.009G059200 [exp] 121 / 8e-30 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 118 / 6e-29 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248200 [exp] 104 / 4e-26 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.010G201600 [exp] 93 / 9e-22 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 96 / 1e-20 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025888 [exp] 879 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 878 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 877 / 0 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 872 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10022603 [exp] 193 / 1e-53 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 177 / 8e-48 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10029505 [exp] 115 / 2e-28 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025889 [exp] 108 / 2e-27 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10003170 [exp] 105 / 2e-26 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10002339 [exp] 105 / 3e-26 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G248300.3 pacid=42778965 polypeptide=Potri.002G248300.3.p locus=Potri.002G248300 ID=Potri.002G248300.3.v4.1 annot-version=v4.1 ATGGAAGAAGACTTCGAGCTTCCTACCGGAGACGAGATGATGATGAACAACGGCGACCAGCTTGATCTCCCAGACGAAGGTCCGATGCTGAAGGTAGGTG AAGAGAAGGAGATCGGCAACCAAGGCTTGAAAAAGAAGCTTCTCAAGGAAGGTGAAGGTTGGGACACTCCTGATAACGGCGACGAAGTCGAAGTTCATTA CACGGGGACGCTTTTGGACGGAACTCAGTTTGATTCGAGTAGGGACAGAGGGACGCCGTTCAAGTTCACTCTTGGTCAAGGCCAAGTGATTAAAGGATGG GACCTAGGTATCAAGACAATGAAGAAAGGTGAAAATGCCCTTTTCACCATTCCTGCTGACTTGGCTTATGGTTCTTCTGGCTCACCTCCAACTATTCCTC CCAATGCCACACTCCAGTTTGATGTTGAATTGTTGTCCTGGAGCAGCATCAAGGACATCTGTAAGGATGGTGGGATATTTAAGAAGATACTTGTTGAAGG AGAGAAATGGGAGAATCCGAAGGACCTTGACGAAGTGTTAGTTCGGTATGAAGCTCAACTCGAGGATGGTTCAGTTATTGCTAGGTCTGACGGAGTAGAG TTCACTGTTAAGGATGGTCATTTCTGTCCTGCACTGGCAAGAGCTGTGAAGACAATGAAGATGGGGGAGAAGGTTCTCTTAACAGTGAAGCCACAATATG GATTTGGGGAGAAGGGTAAGCCAGCATCTGGCGATGAAAGTGCTGTTCCACCTAATGCTAATATTCAGATTACTCTGGAGTTGGTTGCCTGGAAGACTGT GACGGAGGTAACTGATGACAAGAAGGTTATAAAGAAAATCTTGAAGGAAGGCGATGGATATGATCGCCCAAATGAGGGGGCTGTTGTAAAAGTGAAATTG ATTGGGAAGTTGCAAGATGGCACAGTATTTTTTAAGAAGGGACAAGACGACAGTGAGTTGTTTGAGTTCAAGACAGATGAAGAGCAAGTAATTGATGGAC TTGATAGAGCTGTGTCTACGATGAAGAAAGGTGAGCTAGCCCTTTTGACCATTGCACCGGAGTATGCATTTGGCTCATCTGAGTCGCAGCAGGAGCTGGC TGTTGTTCCTCCAAACTCTACTGTGTGCTATGAGATAGAGCTGGTTTCCTTCGATAAGGAGAAGGAATCATGGGACATGAATACTGATGAGAAGATTGAA GCTGCTGGCAAAAAGAAGGAAGAGGGCAATGTGTTGTTCAAGGCTGGAAAATATGCAAAGGCATCTAAAAGATATGAGAAGGCTGTGAAGTATATAGAAT ATGATTCTTCTTTTAGCGAGGAGGAGAAAAAGCAGGCAAAGGCACTGAAGGTGGCCTGCAACCTAAACAACGCTGCCTGCAAACTGAAATTAAAGGATTA CAAACAGGCAGAGAAGTTGTGCACCAAGGTATTAGAGTTGGAGAGTAGAAATGTGAAGGCTCTCTACAGAAGAGCCCAGGCTTATATTCAGCTGGCAGAT TTGGATCTGGCTGAGTTTGATATTAAGAAAGCTCTTGAGATTGATCCTGACAACAGGGATGTCAAGCTGGAGCACAAAACTTTGAAAGAAAAGATGAAGG AATACAATAAGAAGGAAGCCAAGTTTTATGGCAACATGTTTGCCAAGATGTCTAAGGTGGGATCTCTTGAATCTAATGTAAGTATGCAGCCTAAACTGAT AACTTCTAATTGCTACAATGCCCAAGTTCTTTATACTAAGACTGCGTTTTGCCTCTATGACGTATAG
AA sequence Show only first row Show all	>Potri.002G248300.3 pacid=42778965 polypeptide=Potri.002G248300.3.p locus=Potri.002G248300 ID=Potri.002G248300.3.v4.1 annot-version=v4.1 MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGW DLGIKTMKKGENALFTIPADLAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVLVRYEAQLEDGSVIARSDGVE FTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGKPASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL IGKLQDGTVFFKKGQDDSELFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGSSESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIE AAGKKKEEGNVLFKAGKYAKASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLELESRNVKALYRRAQAYIQLAD LDLAEFDIKKALEIDPDNRDVKLEHKTLKEKMKEYNKKEAKFYGNMFAKMSKVGSLESNVSMQPKLITSNCYNAQVLYTKTAFCLYDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	0	1
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	4.12	0.9311
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	6.78	0.9275
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.001G054400 [exp]	7.74	0.9235	CPN60.1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.016G139100 [exp]	9.48	0.8791
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	9.69	0.8764
AT1G66080			unknown protein		Potri.004G082100 [exp]	11.22	0.9217
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Potri.003G055800 [exp]	11.31	0.9242	Pt-HSP91.3
AT5G58110			chaperone binding;ATPase activ...		Potri.006G080900 [exp]	11.83	0.8928
AT1G23100			GroES-like family protein (.1)		Potri.008G130500 [exp]	14.28	0.9243
AT4G02450			HSP20-like chaperones superfam...		Potri.005G199700 [exp]	18.33	0.8713

Compare expression of checked genes

Potri.002G248300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.