Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07340 349 / 5e-115 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 307 / 2e-98 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 210 / 2e-62 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 211 / 1e-61 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 190 / 7e-55 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT1G10120 170 / 1e-47 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 167 / 5e-47 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G59640 163 / 4e-46 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 160 / 7e-45 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G62610 153 / 3e-42 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G235400 [exp] 470 / 1e-160 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 426 / 1e-143 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 217 / 2e-63 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.008G113200 [exp] 210 / 2e-60 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 181 / 7e-51 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.004G156000 [exp] 180 / 9e-51 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G040000 [exp] 172 / 1e-49 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.015G068100 [exp] 169 / 2e-48 AT5G62610 263 / 7e-88 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 171 / 7e-48 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002337 [exp] 286 / 5e-91 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003172 [exp] 247 / 3e-77 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 205 / 4e-59 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 201 / 1e-57 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030908 [exp] 193 / 2e-52 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013284 [exp] 175 / 1e-50 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030807 [exp] 174 / 2e-50 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10030581 [exp] 185 / 1e-49 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10006491 [exp] 172 / 4e-48 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033120 [exp] 168 / 6e-48 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G248500.1 pacid=42779189 polypeptide=Potri.002G248500.1.p locus=Potri.002G248500 ID=Potri.002G248500.1.v4.1 annot-version=v4.1 ATGGAGAGTGAGTACTTTTTCAATGCAGGAGTCCCTCCACAAGCATTGCTCTTTGAACCAACCTCAACCTCTTCATCGATGCCAGTTTGGCAATCCCTCT CATCTCCCATGGAAATGCAAGATAATTGCTCAGCCCGCCGCTTGTTCAATTCCAACTGGGAAAAGTCAACGGATCACAGTCCTCACTTTGAGTCTTCCCT GAGCTCAATGGTGTCCTCTCCAGGAGTATCAAACTGTAACGTGTCCAGTGAGAGCTTTATGGTCAGAGAACTGATAGGAAATCTAGGAAACATTGACAAC AGCAACAACCCTGGTGAGATCTCACCGCATTCTCAGCCAATGTTGGCAGCTTCCTATATTACAGCTGCCAATAACAGTGCCAACACCTCATGCTATACTA CTCCTTTGAATTCACCACCCAAGCTGAATATGCCTGTCATGGATCAATTTTCGAAAGAGCATTTGAATATCCCCAGTTTGGGAAAACCAATGGGTTTGAA TTCCAGTGTGGCAGAATTCACAGCTGATCCGGGATTTGCCGAGAGAGCTGCAAAGTTCTCTTGCTTTGGCAGCAGGAGTTTCAATGGCAGAATCAGCCAG TTGGGGCTAAACAATGCTGAAATGGCTAATGGATGTAATCCATTGATGGGAAATGGCAAGTTGGCGCGTGTTGCGAGTAGTCCTTTACTCAAGGCAGTGG GATCTCAAAAGGGTAACAAGAGTACTCCATTGCAGGATCGATCCGAATTGACAAATTCTCAGGAGTCCTCTGTATCTGAACAAATTCCAAGTGGGGAGGC AGGTTTAAAGGCCTCCAATGAGTTAAATTCCAGGAAAAGAAAAGCACTTTCCAAGGGAAAAGCAAAACAATCAGCATCAAACCCACCAGCCAGTGCTACG AAGGATGCAGAAACTGATGATAATTCAAACACGAAAAGAATCAAGCCAAATGAAGGAGAAGAGAATGAAAATAGTCCTGTTAAAGCAGAGGAAGAGCCAA AGGGCAGCGGAGATGATATCCAAAACAAGGCCAATTCAAGGCCTCCTGAGCCTCCTAAGGACTACATTCATGTTAGAGCAAGGAGGGGTCAAGCAACTGA TAGCCATAGCCTTGCTGAAAGAGTTCGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTCCAAGATCTTGTGCCTGGTTGCAATAAGGTCACAGGAAAA GCCCTTATGCTTGATGAAATCATAAATTACGTGCAGTCATTGCAACGGCAAGTTGAGTTCCTCTCTATGAAGTTGGCTTCTGTGAATACCAGGCTGGATT TTAACATGGACACTCTCATTTCAAAAGATATTTTCCAATCAAGCCAACCATTGCCCCATCCAATATTTCCATTAGATTCCTCGGCACCGGCAGCAATATT TAGCCACCAACAGCAGCAAAATCCACCACTGCATAGCAATATTTCTAATGGGGCAGTGACCCACTGCTCTGTGGACCCATTAGATACCACTGGACTGTGC CAAACCCTCAATGCTCAGTTACCCCCGCTTGATGGATTTACCCAAAATGCTCATCAGTATCCAACATTCTGTGAAGATGACCTGCAGACCATTGTTCAGA TGGGTTATGGCCAGAATCCAAACCTGGAAACATTTCTGCCACAAAATTTCCATGGTTCAAATCAAGTATCCCACATGAAAATCGAGCTCTAA
AA sequence Show only first row Show all	>Potri.002G248500.1 pacid=42779189 polypeptide=Potri.002G248500.1.p locus=Potri.002G248500 ID=Potri.002G248500.1.v4.1 annot-version=v4.1 MESEYFFNAGVPPQALLFEPTSTSSSMPVWQSLSSPMEMQDNCSARRLFNSNWEKSTDHSPHFESSLSSMVSSPGVSNCNVSSESFMVRELIGNLGNIDN SNNPGEISPHSQPMLAASYITAANNSANTSCYTTPLNSPPKLNMPVMDQFSKEHLNIPSLGKPMGLNSSVAEFTADPGFAERAAKFSCFGSRSFNGRISQ LGLNNAEMANGCNPLMGNGKLARVASSPLLKAVGSQKGNKSTPLQDRSELTNSQESSVSEQIPSGEAGLKASNELNSRKRKALSKGKAKQSASNPPASAT KDAETDDNSNTKRIKPNEGEENENSPVKAEEEPKGSGDDIQNKANSRPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGK ALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFNMDTLISKDIFQSSQPLPHPIFPLDSSAPAAIFSHQQQQNPPLHSNISNGAVTHCSVDPLDTTGLC QTLNAQLPPLDGFTQNAHQYPTFCEDDLQTIVQMGYGQNPNLETFLPQNFHGSNQVSHMKIEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G248500 [exp]	0	1
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Potri.005G241000 [exp]	2.00	0.7775
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	2.82	0.8296
AT5G10020			Leucine-rich receptor-like pro...		Potri.007G082800 [exp]	3.87	0.7757
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	4.58	0.7664
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.005G179300 [exp]	7.00	0.6817	ALDH3.3
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.001G301800 [exp]	8.18	0.8365
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.008G156100 [exp]	11.09	0.6949	TSO1.2
AT1G16670			Protein kinase superfamily pro...		Potri.010G221400 [exp]	12.40	0.7330
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	12.84	0.8070
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	13.63	0.7747

Compare expression of checked genes

Potri.002G248500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.