Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 573 / 0 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 302 / 3e-98 ARM repeat superfamily protein (.1) AT3G46510 278 / 1e-86 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 276 / 6e-86 ATPUB14 plant U-box 14 (.1) AT1G23030 266 / 2e-82 PUB11 ARM repeat superfamily protein (.1) AT1G71020 258 / 7e-81 ARM repeat superfamily protein (.1.2) AT2G28830 266 / 1e-79 AtPUB12 PLANT U-BOX 12 (.1) AT5G18340 243 / 4e-75 ARM repeat superfamily protein (.1) AT5G18330 231 / 6e-71 ARM repeat superfamily protein (.1) AT5G42340 225 / 1e-66 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029500 [exp] 640 / 0 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052500 [exp] 578 / 0 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.013G052200 [exp] 545 / 0 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.008G035700 [exp] 285 / 1e-89 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 285 / 3e-89 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 283 / 5e-89 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 281 / 8e-88 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 273 / 4e-85 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 268 / 4e-83 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025885 [exp] 606 / 0 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10038218 [exp] 593 / 0 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10009594 [exp] 530 / 0 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10020413 [exp] 524 / 0 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10037970 [exp] 291 / 6e-92 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10016565 [exp] 278 / 2e-86 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 277 / 4e-86 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 261 / 2e-80 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 259 / 5e-76 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10012260 [exp] 221 / 5e-65 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G248600.1 pacid=42778254 polypeptide=Potri.002G248600.1.p locus=Potri.002G248600 ID=Potri.002G248600.1.v4.1 annot-version=v4.1 ATGGCGAAAACAGGGGTCTTTAAATCCGATCCGATGGTGATGACTAAGGCGATGGAATTAAAGAAAGAACTGCAGAAGCTAGTGAGGAACATTGTGGATG ATGAGGATTACCGGACGGAATTGATTGATCAAGCAAGAGAGACTCTTTTTGCTTTGAAGGGACTGAAGGTGAAGAGGAGATCATCGTCGTTGAAGCTGCG TGAAACAGTGTTGTGCCCTGAAGAGTTTAAGTGCCCTTTATCCAAGGAATTGATGAGAGATCCTGTGGTTTTGGCTACAGGCCAGACGTATGATAGACCC TTCATCCAGAAATGGCTGAAAGCAGGCAATCGGACGTGCCCTCTAACGCAACAAGTACTGTCGCACACAATTCTCACTCCTAATCTGTTGATAAGGGAAA TGATATCGCAGTGGTGTAAGAGTCAGGGGTTAGAATTGCCAGACCTTTCTCAAAATGTTAACGAGGAAGGAATAACAGAAGCAGATCGCGACCATTTTCT GTCTTTGCTTGAAAAAATGTCTCTAACACTTCCTGAACAAAAAGATGCAGCAAGGGAGCTGAGGCTGTTGACAAAGAGGATGCCTTCATTCCGGGCGTTA TTTAGCGAGTCACTTGAGGCCATTCCTCAATTGCTCAGACCACTCTCTGAGGGTAAGTCTGGAAGTTCGATGTACCCTAATCTCCAAGAAGATATCATCA CCACCCTGTTGAACCTTTCGATCCACGACAATAACAAGAAGCTTGTTGCTGAAACCCCCATGGTAATTCCTCTTCTTATGGAAGCATTAAGGTCTGGAAG TATTGAGACGAGGACTAATGCAGCTGCTGCCCTTTTCACACTCTCTGCTCTAGATTCCAACAAGACACTGATCGGCAAATCAGGTGCCCTGAAACCACTT ATTGACCTTTTAGAGGAGGGACATCCTTCAGCTATGAAAGATGTTGCTTCTGCAATTTTTAACCTGTGTATTATCCATGAAAACAAGGCGAGAGCTGTGA GGGATGGTGCATTAAAGGTGATTCTGACGAAGATCATGAATGGTATGCATGTTGATGAGTTATTGGCTATCCTCGCTGTGCTTGCTAGTCATCAAAAGGT GGTCGAGGAACTGGGAGACTCTGGAGCTGTTCCTTGCCTGCTTCGCATTATCAGGGAGAGCACCTGTGACCGCAACAAGGAAAATTGCATCGCCATTCTC CATACCATCTGTTTGAACGACCGAACCAAGTGGAAAGTAATGAGGGACGAGGAGAGTTCTTACGGAACAATTTCTAAACTGGCTCGACATGGCACTTCAA GGGCCAAGAGGAAAGCTAATGGCATCCTCGAGAGACTGAATAGGGCTGTCAATCTGACTCATACAGCATAA
AA sequence Show only first row Show all	>Potri.002G248600.1 pacid=42778254 polypeptide=Potri.002G248600.1.p locus=Potri.002G248600 ID=Potri.002G248600.1.v4.1 annot-version=v4.1 MAKTGVFKSDPMVMTKAMELKKELQKLVRNIVDDEDYRTELIDQARETLFALKGLKVKRRSSSLKLRETVLCPEEFKCPLSKELMRDPVVLATGQTYDRP FIQKWLKAGNRTCPLTQQVLSHTILTPNLLIREMISQWCKSQGLELPDLSQNVNEEGITEADRDHFLSLLEKMSLTLPEQKDAARELRLLTKRMPSFRAL FSESLEAIPQLLRPLSEGKSGSSMYPNLQEDIITTLLNLSIHDNNKKLVAETPMVIPLLMEALRSGSIETRTNAAAALFTLSALDSNKTLIGKSGALKPL IDLLEEGHPSAMKDVASAIFNLCIIHENKARAVRDGALKVILTKIMNGMHVDELLAILAVLASHQKVVEELGDSGAVPCLLRIIRESTCDRNKENCIAIL HTICLNDRTKWKVMRDEESSYGTISKLARHGTSRAKRKANGILERLNRAVNLTHTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.002G248600 [exp]	0	1
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	11.61	0.7903
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.006G191000 [exp]	22.00	0.7886
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	36.37	0.7438
AT5G18470			Curculin-like (mannose-binding...		Potri.001G437875 [exp]	40.65	0.7553
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.002G024000 [exp]	44.47	0.7486
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116100 [exp]	55.96	0.7391
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232400 [exp]	57.96	0.7610
AT2G37260	WRKY	DSL1, ATWRKY44,...	TRANSPARENT TESTA GLABRA 2, DR...		Potri.016G083600 [exp]	69.28	0.7551
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.017G134800 [exp]	75.39	0.7394	Pt-ZFP4.1
AT5G52120		ATPP2-A14	phloem protein 2-A14 (.1)		Potri.015G138600 [exp]	96.35	0.7288

Compare expression of checked genes

Potri.002G248600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.