Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07370 388 / 4e-137 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT2G42810 67 / 3e-12 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G11840 59 / 1e-09 PUB24 plant U-box 24 (.1) AT2G45920 57 / 3e-09 U-box domain-containing protein (.1) AT4G11260 56 / 1e-08 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT3G18710 55 / 2e-08 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT3G61390 54 / 4e-08 RING/U-box superfamily protein (.1.2) AT4G08320 53 / 7e-08 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G62740 53 / 1e-07 Hop2 Hop2, stress-inducible protein, putative (.1) AT5G67340 53 / 1e-07 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051000 [exp] 65 / 2e-11 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.004G071100 [exp] 61 / 2e-10 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.014G141800 [exp] 59 / 9e-10 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.011G071400 [exp] 59 / 1e-09 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.005G177400 [exp] 57 / 4e-09 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G144700 [exp] 56 / 2e-08 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 55 / 3e-08 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.001G216300 [exp] 53 / 7e-08 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.012G046900 [exp] 54 / 8e-08 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038219 [exp] 404 / 2e-143 AT3G07370 372 / 6e-131 carboxyl terminus of HSC70-interacting protein (.1) Lus10025884 [exp] 403 / 6e-143 AT3G07370 375 / 5e-132 carboxyl terminus of HSC70-interacting protein (.1) Lus10020412 [exp] 394 / 3e-139 AT3G07370 358 / 2e-125 carboxyl terminus of HSC70-interacting protein (.1) Lus10009593 [exp] 389 / 4e-137 AT3G07370 356 / 2e-124 carboxyl terminus of HSC70-interacting protein (.1) Lus10019308 [exp] 65 / 2e-11 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 60 / 7e-10 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039297 [exp] 58 / 2e-09 AT4G11260 409 / 5e-143 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10018004 [exp] 57 / 5e-09 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10032305 [exp] 56 / 7e-09 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10027540 [exp] 55 / 2e-08 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G248700.1 pacid=42778268 polypeptide=Potri.002G248700.1.p locus=Potri.002G248700 ID=Potri.002G248700.1.v4.1 annot-version=v4.1 ATGGGACCGGGAGTATCCGCATTGAGTGACGAAGAGAAACGAGCAGATAAGTTGAGGCAAGAAGGGAATATATGCTTTAGTAAAGATCGATTTCAAGCCG CTATCGATGCGTACACTGCGGCGATTACGCTGTGCCCTAAAGTTCCTGTTTATTGGACTAATCGTGCTTTATGCCATCGAAAACGCAATGATTGGACTAG AGTAGAAGAGGATTCTCGCAAGGCCATTCAGCTTGATCATTACTCTGTCAAGGCTCACTATATGTTGGGACTCGCATTACTTCAGAAGCAAGAGTACTCT GAAGGAGTCAAGGAGTTGGAGAAAGCATTGGATCTTGGTAGGGGTGCCAACCCGAATGGTTACATGGTGGAGGAGATCTGGGAGGAGCTAGCAAAGGCAA AATACTTGGAGTGGGAGGAAGAATCTACGCAGCGTTCATGGGAACTACAAAGCTTGAAAGAAGCTTGTGAGAGGGCTCTTAAAGAAAAACATTTCCTTGA TGATTCTGAGACAGAAGGATTCCTGGATGACCCAATTGTTTCAATTGTTTCCCATCTGCAACAATTGGAGCTTCTAGGACAAGTATTCCAGAAAGCTGCA GAAGATGACACGCCATCCGAGGTGCCAGATTATTTATGTTGTAAAATCACCCTTGATATTCTCCGTGATCCTGTCATTACTCCAAGTGGGGTTTCATATG AAAGAGCAGTGCTCCTTGACCATCTTGAGAAGGTGGGAAATTTTGATCCAGTCACACGAGAACCTCTTGAACCATCTCAGCTGGTTCCGAACTTAGCTAT AAAGGAGGCGGTCCATGCATACTTGGACAAACATGGTTGGGCATACAAGACTGAATCGAATTGA
AA sequence Show only first row Show all	>Potri.002G248700.1 pacid=42778268 polypeptide=Potri.002G248700.1.p locus=Potri.002G248700 ID=Potri.002G248700.1.v4.1 annot-version=v4.1 MGPGVSALSDEEKRADKLRQEGNICFSKDRFQAAIDAYTAAITLCPKVPVYWTNRALCHRKRNDWTRVEEDSRKAIQLDHYSVKAHYMLGLALLQKQEYS EGVKELEKALDLGRGANPNGYMVEEIWEELAKAKYLEWEEESTQRSWELQSLKEACERALKEKHFLDDSETEGFLDDPIVSIVSHLQQLELLGQVFQKAA EDDTPSEVPDYLCCKITLDILRDPVITPSGVSYERAVLLDHLEKVGNFDPVTREPLEPSQLVPNLAIKEAVHAYLDKHGWAYKTESN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	0	1
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Potri.015G030400 [exp]	1.73	0.7571
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	7.21	0.7344
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	14.07	0.7195	GTF901,Pt-TBP1.3
AT4G14746			unknown protein		Potri.010G082500 [exp]	14.96	0.7230
AT4G13550			triglyceride lipases;triglycer...		Potri.010G062700 [exp]	16.24	0.7251
AT5G04750			F1F0-ATPase inhibitor protein,...		Potri.010G240401 [exp]	24.97	0.7207
AT1G26800			RING/U-box superfamily protein...		Potri.008G087200 [exp]	32.49	0.6789
AT4G12760			unknown protein		Potri.014G197700 [exp]	32.86	0.7320
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	37.41	0.7184
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	40.39	0.7021

Compare expression of checked genes

Potri.002G248700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.